Structure of PDB 8e6t Chain D Binding Site BS02

Receptor Information
>8e6t Chain D (length=1290) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QESLSSWIPENIKKKECVYFVESSKLSDAGKVVCQCGYTHEQHLEEATKP
HTFQGTQWDPKKHVQEMPTDAFGDIVFTGLSQKVKKYVRVSQDTPSSVIY
HLMTQHWGLDVPNLLISVTGGAKNFNMKPRLKSIFRRGLVKVAQTTGAWI
ITGGSHTGVMKQVGEAVRDFSLSSSYKEGELITIGVATWGTVHRREGLIH
PTGSFPAEYILDEDGQGNLTCLDSNHSHFILVDDGTHGQYGVEIPLRTRL
EKFISEQTKERGGVAIKIPIVCVVLEGGPGTLHTIDNATTNGTPCVVVEG
SGRVADVIAQVANIPVSDITISLIQQKLSVFFQEMFETFTESRIVEWTKK
IQDIVRRRQLLTVFREGKDGQQDVDVAILQALLKASRSQDHFGHENWDHQ
LKLAVAWNRVDIARSEIFMDEWQWKPSDLHPTMTAALISNKPEFVKLFLE
NGVQLKEFVTWDTLLYLYENLDPSCLFHSKLQKVLVEDPERPACAPAAPR
LQMHHVAQVLRELLGDFTQPLYPRPRHVTFTMDPIRDLLIWAIVQNRREL
AGIIWAQSQDCIAAALACSKILKELSKEEEDTDSSEEMLALAEEYEHRAI
GVFTECYRKDEERAQKLLTRVSEAWGKTTCLQLALEAKDMKFVSHGGIQA
FLTKVWWGQLSVDNGLWRVTLCMLAFPLLLTGLISFREKRLQDVGTPAAR
ARAFFTAPVVVFHLNILSYFAFLCLFAYVLMVDFQPVPSWCECAIYLWLF
SLVCEEMRQLFYDPDECGLMKKAALYFSDFWNKLDVGAILLFVAGLTCRL
IPATLYPGRVILSLDFILFCLRLMHIFTISKTLGPKIIIVKRMMKDVFFF
LFLLAVWVVSFGVAKQAILIHNERRVDWLFRGAVYHSYLTIFGYLLFTNI
LLLNLLIAMFNYTFQQVQEHTDQIWKFQRHDLIEEYHGRPAAPPPFILLS
HLQLFIKRVVRHKQLKNKLEKNEEAALLSWEIYLKENYLQNRQFQQKQRP
EQKIEDISNKVDAMVDLLDLDGDSYHVNARHLLYPNCPVTRFPVPNEKVP
WETEFLIYDPPFYTAERKDAAAMDPMGDTLEPLSTIQYNVVDGLRDRRSF
HGPYTVQAGLPLNPMGRTGLRGRGSLSCFGPNHTLYPMVTRWRRNEDGAI
CRKSIKKMLEVLVVKLPLSEHWALPGGSREPGEMLPRKLKRILRQEHWPS
FENLLKCGMEVYKGYMDDPRNTDNAWIETVAVSVHFQDQNDVELNRLNSN
LHACDSGASIRWQVVDRRIPLYANHKTLLQKAAAEFGAHY
Ligand information
Ligand IDUOO
InChIInChI=1S/C15H24BrN5O14P2/c16-15-20-7-11(17)18-4-19-12(7)21(15)13(26)8(23)5(22)1-2-32-36(28,29)35-37(30,31)33-3-6-9(24)10(25)14(27)34-6/h4-6,8-10,13-14,22-27H,1-3H2,(H,28,29)(H,30,31)(H2,17,18,19)/t5-,6+,8-,9-,10+,13-,14-/m1/s1
InChIKeyYLKLFNYZVXTMJI-XDPXHJCRSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(c(n2)Br)[C@@H]([C@@H]([C@@H](CCOP(=O)(O)OP(=O)(O)OC[C@H]3[C@H]([C@@H]([C@@H](O3)O)O)O)O)O)O)N
ACDLabs 12.01OC1C(COP(=O)(O)OP(=O)(O)OCCC(O)C(O)C(O)n2c3ncnc(N)c3nc2Br)OC(O)C1O
OpenEye OEToolkits 2.0.7c1nc(c2c(n1)n(c(n2)Br)C(C(C(CCOP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)O)O)O)O)O)O)N
CACTVS 3.385Nc1ncnc2n([C@H](O)[C@H](O)[C@H](O)CCO[P](O)(=O)O[P](O)(=O)OC[C@@H]3O[C@@H](O)[C@@H](O)[C@@H]3O)c(Br)nc12
CACTVS 3.385Nc1ncnc2n([CH](O)[CH](O)[CH](O)CCO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH](O)[CH](O)[CH]3O)c(Br)nc12
FormulaC15 H24 Br N5 O14 P2
Name(3R,4R,5R)-5-(6-amino-8-bromo-9H-purin-9-yl)-3,4,5-trihydroxypentyl [(2S,3S,4S,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)
ChEMBL
DrugBank
ZINC
PDB chain8e6t Chain D Residue 1602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8e6t A unified mechanism for human TRPM2 activation, desensitization and inhibition
Resolution3.7 Å
Binding residue
(original residue number in PDB)
P1432 R1433 Y1485
Binding residue
(residue number reindexed from 1)
P1219 R1220 Y1272
Annotation score1
External links
PDB RCSB:8e6t, PDBe:8e6t, PDBj:8e6t
PDBsum8e6t
PubMed
UniProtO94759|TRPM2_HUMAN Transient receptor potential cation channel subfamily M member 2 (Gene Name=TRPM2)

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