Structure of PDB 8bz7 Chain D Binding Site BS02

Receptor Information
>8bz7 Chain D (length=599) Species: 1639 (Listeria monocytogenes) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KDIKISVVVPTYNTELEGLKNLMASIDKQTMNPDEYELVFVDDGSTTDTY
ERLQEFAETRPNMTVKQIENSGWGSRPRNIATKMAKGEYILYLDHDDTVF
PETFERVYNFGKENNLDVVSGKEVRTNGWSWGWKQFSENNPHAEEMGIEC
LLPMTPHKFYKREFLLENDITFDDGARVLWEDVYFNSKAFIHGAKVGILA
DYPTYYWIATGRDPHEKWNQINKLFNFFKDNIKEQRDLDFMLTHWYRSRV
LGILGQWLLKNNNERIDIEFNYAKKLAEELIPAYISENLDKNNQVKDYLL
RQGDLDSLKKLAQIDAGITALSYVEDAYFKEDKLFFKTSTKMTYEDKEDF
FIEKTADRMERILPEEIKSKLPKEFFDYSDDLAEFTYEPSIKGRNSRATW
KIDGSTSNVEVVNKKANLYKIEGEMSFSVQINDYILDAADKKQPWDIATR
FTGLGYTSHRALTIGKILIKTALINNKTMIVYKNASGLISLDVGSSVRSI
VEDSGVKREQILIDKTSGKVTIPLNEIHVFGESLIEGNAELKPVGISDAD
PINVKAKLIGEANKARVEVLLGDEKLSGEYHLVTNIQGKKDKQQIKITL
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain8bz7 Chain D Residue 703 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8bz7 Crystal structure of the L. monocytogenes RmlT in complex with TDP-rhamnose
Resolution2.2 Å
Binding residue
(original residue number in PDB)
Y347 D370
Binding residue
(residue number reindexed from 1)
Y323 D346
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016740 transferase activity
GO:0016757 glycosyltransferase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8bz7, PDBe:8bz7, PDBj:8bz7
PDBsum8bz7
PubMed
UniProtA0A401AAP7

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