Structure of PDB 7zc6 Chain D Binding Site BS02

Receptor Information
>7zc6 Chain D (length=304) Species: 1553 (Clostridium tetanomorphum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YTVSSSPHIRAKDTTQSIMRDVVIALLPATIAGVYFFKLQGLLVILASVL
SCVVAEYIWQKASKKKVTVGDYSAVVTGLLLAFNVPASIPLWIPVVGGFF
AIIVVKQFFGGLGQNIVNPALAARAFLLASWPVQMTSWTLDGVTTATPLA
ILKGNEATGAAAPDLMSVFIGHVGGCIGETSALALLIGGAYLFYKHIIDW
RIPVSFIGTTFIFTAIAGRGSSPVYELFAGGLMLGAIFMATDYATSPITP
LGRIIFGVGCGVITSLIRIFGGYPEGVSYSILVMNLFVPLIERWTAPKIF
GKVK
Ligand information
Ligand IDRBF
InChIInChI=1S/C17H20N4O6/c1-7-3-9-10(4-8(7)2)21(5-11(23)14(25)12(24)6-22)15-13(18-9)16(26)20-17(27)19-15/h3-4,11-12,14,22-25H,5-6H2,1-2H3,(H,20,26,27)/t11-,12+,14-/m0/s1
InChIKeyAUNGANRZJHBGPY-SCRDCRAPSA-N
SMILES
SoftwareSMILES
CACTVS 3.385Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO)c2cc1C
OpenEye OEToolkits 1.7.6Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(CO)O)O)O
OpenEye OEToolkits 1.7.6Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O
CACTVS 3.385Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO)c2cc1C
ACDLabs 12.01N=2C(=O)NC(=O)C3=Nc1cc(C)c(C)cc1N(C=23)CC(O)C(O)C(O)CO
FormulaC17 H20 N4 O6
NameRIBOFLAVIN;
RIBOFLAVINE;
VITAMIN B2
ChEMBLCHEMBL1534
DrugBankDB00140
ZINCZINC000002036848
PDB chain7zc6 Chain D Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7zc6 Purification and structural characterization of the Na + -translocating ferredoxin: NAD + reductase (Rnf) complex of Clostridium tetanomorphum.
Resolution4.27 Å
Binding residue
(original residue number in PDB)
M25 V28 V82 L86 N121 P125 D248 Y249 A250
Binding residue
(residue number reindexed from 1)
M19 V22 V76 L80 N115 P119 D242 Y243 A244
Annotation score4
Enzymatic activity
Enzyme Commision number 7.-.-.-
Gene Ontology
Biological Process
GO:0022900 electron transport chain
GO:0055085 transmembrane transport
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:7zc6, PDBe:7zc6, PDBj:7zc6
PDBsum7zc6
PubMed36274063
UniProtA0A923IYK2

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