Structure of PDB 7ypp Chain D Binding Site BS02

Receptor Information
>7ypp Chain D (length=165) Species: 947166 (Ramazzottius varieornatus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VNYLFRGPVTAVAAIAGEGEHAGIKGSLTFLQKSLDGRTVINGTISGLPE
GKHGLHIVDSGDMTKGCYITTAKGHLNPFNLSHGAPSDSARHVGDLGNIY
ADDTGISVINLTDTVISLFPTPAFVIGRILVIHTTYDDLGRGGSPVSKVN
GNAGGRLACGIISYV
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7ypp Chain D Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7ypp Structure of a superoxide dismutase from a tardigrade: Ramazzottius varieornatus strain YOKOZUNA-1.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		H104 H112 H121 D124
Binding residue
(residue number reindexed from 1)		H75 H83 H92 D95
Annotation score1
Enzymatic activity
Enzyme Commision number 1.15.1.1: superoxide dismutase.
Gene Ontology
Molecular Function
GO:0005507 copper ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006801 superoxide metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:7ypp, PDBe:7ypp, PDBj:7ypp
PDBsum7ypp
PubMed37358501
UniProtA0A1D1VU85|SODC_RAMVA Superoxide dismutase [Cu-Zn] (Gene Name=RvY_13070)

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