Structure of PDB 7t0u Chain D Binding Site BS02

Receptor Information
>7t0u Chain D (length=123) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGL
FYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVM
ATAMYLQMEHVVDTCRKFIKASE
Ligand information
Ligand IDE3I
InChIInChI=1S/C30H29Cl2F3N8O5/c1-14-9-41(16-12-48-13-16)3-4-43(14)22-7-21(20(32)8-37-22)38-23(44)11-42-10-18(15-5-17(26(36)46)25(45)19(31)6-15)24-27(42)39-29(30(33,34)35)40(2)28(24)47/h5-8,10,14,16,45H,3-4,9,11-13H2,1-2H3,(H2,36,46)(H,37,38,44)/t14-/m0/s1
InChIKeyKEVLSWXLPHCNJR-AWEZNQCLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC1CN(CCN1c2cc(c(cn2)Cl)NC(=O)Cn3cc(c4c3N=C(N(C4=O)C)C(F)(F)F)c5cc(c(c(c5)Cl)O)C(=O)N)C6COC6
CACTVS 3.385C[CH]1CN(CCN1c2cc(NC(=O)Cn3cc(c4cc(Cl)c(O)c(c4)C(N)=O)c5C(=O)N(C)C(=Nc35)C(F)(F)F)c(Cl)cn2)C6COC6
CACTVS 3.385C[C@H]1CN(CCN1c2cc(NC(=O)Cn3cc(c4cc(Cl)c(O)c(c4)C(N)=O)c5C(=O)N(C)C(=Nc35)C(F)(F)F)c(Cl)cn2)C6COC6
ACDLabs 12.01NC(=O)c1cc(cc(Cl)c1O)c1cn(CC(=O)Nc2cc(ncc2Cl)N2CCN(CC2C)C2COC2)c2N=C(N(C)C(=O)c12)C(F)(F)F
OpenEye OEToolkits 2.0.7C[C@H]1CN(CCN1c2cc(c(cn2)Cl)NC(=O)Cn3cc(c4c3N=C(N(C4=O)C)C(F)(F)F)c5cc(c(c(c5)Cl)O)C(=O)N)C6COC6
FormulaC30 H29 Cl2 F3 N8 O5
Name3-chloro-5-{7-[2-({5-chloro-2-[(2S)-2-methyl-4-(oxetan-3-yl)piperazin-1-yl]pyridin-4-yl}amino)-2-oxoethyl]-3-methyl-4-oxo-2-(trifluoromethyl)-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl}-2-hydroxybenzamide
ChEMBL
DrugBank
ZINC
PDB chain7t0u Chain D Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7t0u Crystal structure of the BCL6 BTB domain in complex with OICR-12387
Resolution1.49 Å
Binding residue
(original residue number in PDB)
M51 A52 C53 S54 G55 Y58 F89 Q113 M114 E115 H116 V117
Binding residue
(residue number reindexed from 1)
M45 A46 C47 S48 G49 Y52 F83 Q107 M108 E109 H110 V111
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7t0u, PDBe:7t0u, PDBj:7t0u
PDBsum7t0u
PubMed
UniProtP41182|BCL6_HUMAN B-cell lymphoma 6 protein (Gene Name=BCL6)

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