Structure of PDB 7p9q Chain D Binding Site BS02

Receptor Information

>7p9q Chain D (length=452) Species: 37929 (Glutamicibacter nicotianae)

HMHKDLHSIIDALDTAGRLIRVRSQVKAEHELAGIAAKYEGCDKAVLFEN
VDGNDIPVLMGLYWSRDLLGSLYGVDAVDMPRFITSKISHWKSEPTAHQL
IAREHAPVMAHSPRVDLLSLPIPVHAQKDGGAYVDAGVVIAADPDTGVLN
TSIQRFMVENENTLHVNIDAGRHLGAYLAKAKAKPLSFSLNIGVHPGVHF
AAATPSEVAPLDVDELGIAAEFQDGPVRIVQGDDPRVTVLADAMISLECQ
MYADDLADEGPFAEVTGYYAERAPRPRVTVTAVHLQRNPVFHSILSGQEV
FNSVGLLGESALFDQVSKQVPGILEVALTDGGCGFYHAVVQLKQVRAGWS
KQAILATFAAFPPLKMVTIVDEDVDLRNPRDVEWAMATRLDPERGILRID
DTFGHGLNPSFPDYFGSKVGFDATRSFPFEEKHERITYQDVDLSRFEIVE
GH

Ligand information

• Ligand ID: 4LU
• InChI: InChI=1S/C22H29N4O9P/c1-10-7-12-16-15(11(10)2)22(3,4)5-6-25(16)17-19(23-21(31)24-20(17)30)26(12)8-13(27)18(29)14(28)9-35-36(32,33)34/h6-7,13-14,18,27-29H,5,8-9H2,1-4H3,(H3-,23,24,30,31,32,33,34)/p+1/t13-,14+,18-/m0/s1
• InChIKey: KOUJZPGFPGLHCZ-IYOUNJFTSA-O
• SMILES:
  OpenEye OEToolkits 1.9.2: Cc1cc2c3c(c1C)C(CC=[N+]3C4=C(N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)NC(=O)NC4=O)(C)C
  CACTVS 3.385: Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)C3=C(C(=O)NC(=O)N3)[N+]4=CCC(C)(C)c(c1C)c24
  OpenEye OEToolkits 1.9.2: Cc1cc2c3c(c1C)C(CC=[N+]3C4=C(N2CC(C(C(COP(=O)(O)O)O)O)O)NC(=O)NC4=O)(C)C
  CACTVS 3.385: Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)C3=C(C(=O)NC(=O)N3)[N+]4=CCC(C)(C)c(c1C)c24
  ACDLabs 12.01: c1c3c4c(c(c1C)C)C(C)(CC=[N+]4C2=C(NC(NC2=O)=O)N3CC(C(C(O)COP(O)(O)=O)O)O)C
• Formula: C22 H30 N4 O9 P
• Name: 1-deoxy-5-O-phosphono-1-(3,3,4,5-tetramethyl-9,11-dioxo-2,3,8,9,10,11-hexahydro-7H-quinolino[1,8-fg]pteridin-12-ium-7-y l)-D-ribitol;
  prenylated-FMN iminium form
• ZINC: ZINC000263614449
• PDB chain: 7p9q Chain D Residue 503

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7p9q Structural and biochemical characterization of the prenylated flavin mononucleotide-dependent indole-3-carboxylic acid decarboxylase.
• Resolution: 2.53 Å
• Binding residue (original residue number in PDB): D135 N150 I153 Q154 R155 N167 D169 R172 H173 A204 A205 T206 V302
• Binding residue (residue number reindexed from 1): D135 N150 I153 Q154 R155 N167 D169 R172 H173 A202 A203 T204 V300
• Annotation score: 4

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Mon Nov 25 09:33:14 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7p9q', asym_id = 'D', bs = 'BS02', title = 'Structural and biochemical characterization of t...ependent indole-3-carboxylic acid decarboxylase. '

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7p9q', asym_id='D', bs='BS02', title='Structural and biochemical characterization of t...ependent indole-3-carboxylic acid decarboxylase. ')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0016831', uniprot = '', pdbid = '7p9q', asym_id = 'D'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016831', uniprot='', pdbid='7p9q', asym_id='D')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>