Structure of PDB 7ogn Chain D Binding Site BS02

Receptor Information
>7ogn Chain D (length=422) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVY
YNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETY
CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPADLRKLA
VNMVPFPRLHFFMPGFAPLTSRGSLTVPELTQQMFDSKNMMAACDPRHGR
YLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPR
GLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT
EAESNMNDLVSEYQQYQDATAD
Ligand information
Ligand IDV95
InChIInChI=1S/C16H13N3O3/c1-22-16(21)19-15-17-12-8-7-11(9-13(12)18-15)14(20)10-5-3-2-4-6-10/h2-9H,1H3,(H2,17,18,19,21)
InChIKeyOPXLLQIJSORQAM-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385
OpenEye OEToolkits 2.0.7		COC(=O)Nc1[nH]c2cc(ccc2n1)C(=O)c3ccccc3
FormulaC16 H13 N3 O3
Namemethyl N-(6-benzoyl-1H-benzimidazol-2-yl)carbamate;
Mebendazole;
4030
ChEMBLCHEMBL685
DrugBankDB00643
ZINCZINC000000121541
PDB chain7ogn Chain D Residue 503 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7ogn Effect of Clinically Used Microtubule Targeting Drugs on Viral Infection and Transport Function.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		N167 F169 E200 Y202 V238 C241 L242 L252 L255 A316 A317 K352 T353 A354 I378
Binding residue
(residue number reindexed from 1)		N165 F167 E198 Y200 V236 C239 L240 L246 L249 A305 A306 K341 T342 A343 I359
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003924 GTPase activity
GO:0005200 structural constituent of cytoskeleton
GO:0005525 GTP binding
GO:0046872 metal ion binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0000226 microtubule cytoskeleton organization
GO:0000278 mitotic cell cycle
GO:0007017 microtubule-based process
GO:0007399 nervous system development
GO:1902669 positive regulation of axon guidance
Cellular Component
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0015630 microtubule cytoskeleton

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7ogn, PDBe:7ogn, PDBj:7ogn
PDBsum7ogn
PubMed35408808
UniProtQ6B856|TBB2B_BOVIN Tubulin beta-2B chain (Gene Name=TUBB2B)

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