Structure of PDB 7lnp Chain D Binding Site BS02

Receptor Information
>7lnp Chain D (length=543) Species: 484018 (Phocaeicola plebeius DSM 17135) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GTDVFKADSASIAQNYTIPEWFKDAKFGIFIHWGVYSVPAYGSEWYSRWM
YKEGHPINKYHVQTYGPLTKFGYKDFIPMFKAENFNADEWLAVVKSSGAQ
YIVPVAEHHDGFAMYSSTFNKWNAVDMGPKRDIIGELKEATKKAGLRFGL
SSHRCENAWFYEYGMETPSDVQDTTITLYGERLHEPEGQGMTPYCGKYEG
SNERSRRQFLMHTYELIDKYQPELIWFNWTVGKYPFQPTFYKFMAYYYNS
ALDWNKEVVVNTKFGYGDNIQVFDIERGKSDRIREYPWQTDTSVGKKSWS
YCVGEENKSPDHIIDDFVDIVSKNGNLLLNIGPKADGTITDEQKNVLAEI
GKWLKTNGEAIYGSRPWVIASEGHEYTADDIRFTTCDNNLYAVSLAWTDG
SVTIKSLATKYCRNVEIESVEMLGSSEKIDYKMTDEGLVVNFPKNKPTEY
AHVFKIKLKGVVVSKPLYDKVDNGCLITVRVANHNAEDANVTLKSVVDGN
EVSTQVAVKAKSEQWVKMQNKDVKSFDDMSCKFYFNDNLTYEN
Ligand information
Ligand IDY9Y
InChIInChI=1S/C12H15NO8/c14-5-8-9(15)10(16)11(17)12(21-8)20-7-3-1-6(2-4-7)13(18)19/h1-4,8-12,14-17H,5H2/t8-,9+,10+,11-,12+/m0/s1
InChIKeyIFBHRQDFSNCLOZ-MTVMDMGHSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1cc(ccc1[N+](=O)[O-])O[C@H]2[C@H]([C@@H]([C@@H]([C@@H](O2)CO)O)O)O
CACTVS 3.385OC[C@@H]1O[C@@H](Oc2ccc(cc2)[N+]([O-])=O)[C@@H](O)[C@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.7c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)O
CACTVS 3.385OC[CH]1O[CH](Oc2ccc(cc2)[N+]([O-])=O)[CH](O)[CH](O)[CH]1O
FormulaC12 H15 N O8
Nameparanitrophenyl-alpha-L-galactopyranoside;
(2~{S},3~{S},4~{R},5~{S},6~{S})-2-(hydroxymethyl)-6-(4-nitrophenoxy)oxane-3,4,5-triol
ChEMBL
DrugBank
ZINCZINC000000156947
PDB chain7lnp Chain D Residue 602 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7lnp Metabolism of a hybrid algal galactan by members of the human gut microbiome.
Resolution2.7 Å
Binding residue
(original residue number in PDB)
H68 E80 H144 H145 N264 W265 K299 E312 W335
Binding residue
(residue number reindexed from 1)
H32 E44 H108 H109 N228 W229 K263 E276 W299
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004560 alpha-L-fucosidase activity
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006004 fucose metabolic process

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:7lnp, PDBe:7lnp, PDBj:7lnp
PDBsum7lnp
PubMed35289327
UniProtB5CYA5

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