Structure of PDB 7dz5 Chain D Binding Site BS02

Receptor Information
>7dz5 Chain D (length=282) Species: 1128334 (Sinorhizobium fredii CCBAU 83666) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MQGFGVHTSMWTMNWDRPGAERAVAAALKYEVDFIEIPMLNPPAVDTEHT
RALLEKNELRALCSLGLPERAWASVRPDAAIEHLKVAIDKTADLGGEALS
GVIYGGIGERTGVPPTEAEYDNIARVLSAAAKHAKSRGIELGVEAVNRYE
NHLINTGWQAVQMIERVGADNIFVHLDTYHMNIEEKGVGNGILDAREHLK
YIHLSESDRGTPGYGTCGWDEIFSTLAAIGFKGGLAMESFINMPPEVAYG
LAVWRPVAKDEEEVMGNGLPFLRNKAKQYGLI
Ligand information
Ligand IDSDD
InChIInChI=1S/C6H12O6/c7-1-3(9)5(11)6(12)4(10)2-8/h3,5-9,11-12H,1-2H2/t3-,5+,6+/m1/s1
InChIKeyBJHIKXHVCXFQLS-PYWDMBMJSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01O=C(C(O)C(O)C(O)CO)CO
OpenEye OEToolkits 1.7.6C(C(C(C(C(=O)CO)O)O)O)O
OpenEye OEToolkits 1.7.6C([C@H]([C@@H]([C@H](C(=O)CO)O)O)O)O
CACTVS 3.370OC[CH](O)[CH](O)[CH](O)C(=O)CO
CACTVS 3.370OC[C@@H](O)[C@H](O)[C@@H](O)C(=O)CO
FormulaC6 H12 O6
NameD-sorbose
ChEMBL
DrugBank
ZINCZINC000005131991
PDB chain7dz5 Chain D Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7dz5 Towards automated crystallographic structure refinement with phenix.refine.
Resolution1.7 Å
Binding residue
(original residue number in PDB)		H9 S66 E146 E152 H182 H205 R211 E240 L253
Binding residue
(residue number reindexed from 1)		H7 S64 E144 E150 H180 H203 R209 E238 L251
Annotation score4
External links