Structure of PDB 6z1f Chain D Binding Site BS02

Receptor Information
>6z1f Chain D (length=464) Species: 103690 (Nostoc sp. PCC 7120 = FACHB-418) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GYKAGVQDYRLTYYTPDYTPKDTDILAAFRVTPQPGVPFEEAAAAVAAES
STGTWTTVWTDLLTDLDRYKGRCYDIEPVPGEDNQFIAYIAYPLDLFEEG
SITNVLTSIVGNVFGFKALRALRLEDIRFPVAYIKTFQGPPHGIQVERDK
LNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSAPF
QRWRDRFLFVADAITKAQAETGEIKGHYLNVTAPTCEEMLKRAEYAKELK
QPIIMHDYLTAGFTANTTLARWCRDNGVLLHIHRAMHAVIDRQKNHGIHF
RVLAKALRLSGGDHIHTGTVVGKLEGERGITMGFVDLLRENYVEQDKSRG
IYFTQDWASLPGVMAVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGHPW
GNAPGATANRVALEACVQARNEGRNLAREGNDVIREAAKWSPELAVACEL
WKEIKFEFEAMDTV
Ligand information
Ligand IDCAP
InChIInChI=1S/C6H14O13P2/c7-3(1-18-20(12,13)14)4(8)6(11,5(9)10)2-19-21(15,16)17/h3-4,7-8,11H,1-2H2,(H,9,10)(H2,12,13,14)(H2,15,16,17)/t3-,4-,6-/m1/s1
InChIKeyITHCSGCUQDMYAI-ZMIZWQJLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C(C(C(COP(=O)(O)O)(C(=O)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[CH](CO[P](O)(O)=O)[CH](O)[C](O)(CO[P](O)(O)=O)C(O)=O
ACDLabs 10.04O=P(O)(O)OCC(O)C(O)C(O)(C(=O)O)COP(=O)(O)O
OpenEye OEToolkits 1.5.0C([C@H]([C@H]([C@](COP(=O)(O)O)(C(=O)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@](O)(CO[P](O)(O)=O)C(O)=O
FormulaC6 H14 O13 P2
Name2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain6z1f Chain D Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6z1f Dual Functions of a Rubisco Activase in Metabolic Repair and Recruitment to Carboxysomes.
Resolution2.86 Å
Binding residue
(original residue number in PDB)		K202 H295 R296 H328 K335 L336 S380 G382 G404 G405
Binding residue
(residue number reindexed from 1)		K190 H283 R284 H316 K323 L324 S368 G370 G392 G393
Annotation score2
Enzymatic activity
Enzyme Commision number 4.1.1.39: ribulose-bisphosphate carboxylase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004497 monooxygenase activity
GO:0016829 lyase activity
GO:0016984 ribulose-bisphosphate carboxylase activity
GO:0046872 metal ion binding
Biological Process
GO:0009853 photorespiration
GO:0015977 carbon fixation
GO:0015979 photosynthesis
GO:0019253 reductive pentose-phosphate cycle
Cellular Component
GO:0031470 carboxysome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6z1f, PDBe:6z1f, PDBj:6z1f
PDBsum6z1f
PubMed32979320
UniProtP00879|RBL_NOSS1 Ribulose bisphosphate carboxylase large chain (Gene Name=cbbL)

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