Structure of PDB 6xj5 Chain D Binding Site BS02

Receptor Information

>6xj5 Chain D (length=386) Species: 312 (Pseudomonas sp. RS-16) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KRDNVLFQAATDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKN
LGFTVTRSKSAGLVVGDNIVGKIKGRGGKNLLLMSHMDTVYLKGILAKAP
FRVEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEE
KGSFGSRDLIQEEAKLADYVLSFEPTCAGDEKLSLGTSGIAYVQVNITGK
ASHAGAAPELGVNALVEASDLVLRTMNIDDKAKNLRFNWTIAKAGNVSNI
IPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIVTRGRPA
FNAGGKKLVDKAVAYYKEAGGTLGVEERTGGGTDAAYAALSGKPVIESLG
LPGFGYHSDKAEYVDISAIPRRLYMAARLIMDLGAG

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6xj5 Chain D Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6xj5 A Bis(imidazole)-based cysteine labeling tool for metalloprotein assembly.
Resolution	3.11 Å
Binding residue (original residue number in PDB)	H112 D141 E200
Binding residue (residue number reindexed from 1)	H86 D115 E174
Annotation score	1

Enzymatic activity

Enzyme Commision number

3.4.17.11: glutamate carboxypeptidase.

Gene Ontology

	Molecular Function
GO:0004180	carboxypeptidase activity
GO:0008237	metallopeptidase activity
GO:0016787	hydrolase activity
GO:0046872	metal ion binding

	Biological Process
GO:0006508	proteolysis

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Molecular Function

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Biological Process

External links

PDB	RCSB:6xj5, PDBe:6xj5, PDBj:6xj5
PDBsum	6xj5
PubMed	37030124
UniProt	P06621\|CBPG_PSES6 Carboxypeptidase G2 (Gene Name=cpg2)

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