Structure of PDB 6vc6 Chain D Binding Site BS02

Receptor Information
>6vc6 Chain D (length=433) Species: 1871030 (Merdibacter massiliensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKYNVCIVGGGSTYTPGFLKSFVRLQNEFPMEKLVLFDIDAERQQPIGEF
GKILFSERFPELDFSYTTDPAEAYKDMDFIFMQMRAGGLPMRREDEHISL
HLGRIGQETCGAGGMAYGLRSCVDMIESIHQIRQYSPNAWILNYSNPAAI
VAEALRREFPDDNRILNICDQPENIMRSVSRLLNVSWEDLDPVYFGLNHY
GWFTHVYDRKTGEDLLPEIKKIIKEKGFLPQDAEQRDQSWLDTYGFVQTM
MEDFPDFLPNTYDGYYLYPDYKFSHLNPDYTRADEVIDGREKRVFAECRE
VIARGELGDAHAEMMIKVAEAIAYNKNTRFIVIVKNEGAIANMQDDAMVE
LVCELGINGPRRMAVGNIPQFYLGLLVQQVSSEKLLVDAYYEHSYQKALE
AFTLNRLINDAKKAREILDAMIEVNKGMWPELK
Ligand information
Ligand IDG6P
InChIInChI=1S/C6H13O9P/c7-3-2(1-14-16(11,12)13)15-6(10)5(9)4(3)8/h2-10H,1H2,(H2,11,12,13)/t2-,3-,4+,5-,6+/m1/s1
InChIKeyNBSCHQHZLSJFNQ-DVKNGEFBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)OP(=O)(O)O
CACTVS 3.341O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341O[C@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)[C@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)OP(=O)(O)O
ACDLabs 10.04O=P(O)(O)OCC1OC(O)C(O)C(O)C1O
FormulaC6 H13 O9 P
Name6-O-phosphono-alpha-D-glucopyranose;
ALPHA-D-GLUCOSE-6-PHOSPHATE;
6-O-phosphono-alpha-D-glucose;
6-O-phosphono-D-glucose;
6-O-phosphono-glucose
ChEMBL
DrugBankDB02007
ZINCZINC000003875375
PDB chain6vc6 Chain D Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6vc6 2.1 Angstrom Resolution Crystal Structure of 6-phospho-alpha-glucosidase from Gut Microorganisms in Complex with NAD and Mn2+
Resolution2.133 Å
Binding residue
(original residue number in PDB)		R93 E109 N147 D171 H200 W241 Y263 R283 R291
Binding residue
(residue number reindexed from 1)		R92 E108 N146 D170 H199 W240 Y262 R282 R290
Annotation score4
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 22 13:00:29 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6vc6', asym_id = 'D', bs = 'BS02', title = '2.1 Angstrom Resolution Crystal Structure of 6-p...m Gut Microorganisms in Complex with NAD and Mn2+'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6vc6', asym_id='D', bs='BS02', title='2.1 Angstrom Resolution Crystal Structure of 6-p...m Gut Microorganisms in Complex with NAD and Mn2+')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824,0004553,0005975,0016616', uniprot = '', pdbid = '6vc6', asym_id = 'D'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824,0004553,0005975,0016616', uniprot='', pdbid='6vc6', asym_id='D')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>