Structure of PDB 6vbs Chain D Binding Site BS02

Receptor Information

>6vbs Chain D (length=159) Species: 90371 (Salmonella enterica subsp. enterica serovar Typhimurium)

ENTLTVKMNDALSSGTGENIGEITVSETPYGLLFTPHLNGLTPGIHGFHV
HTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGDLPGLV
VNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKPAPLGGGGARF
ACGVIEKLE

Ligand information

• Ligand ID: CU
• InChI: InChI=1S/Cu/q+2
• InChIKey: JPVYNHNXODAKFH-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Cu+2]
  CACTVS 3.341: [Cu++]
• Formula: Cu
• Name: COPPER (II) ION
• DrugBank: DB14552
• PDB chain: 6vbs Chain D Residue 202

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6vbs Structure and Muropeptide Binding of the Virulence Factor Superoxide Dismutase C1 from Salmonella Typhimurium
• Resolution: 1.7 Å
• Binding residue (original residue number in PDB): H49 H51 H130
• Binding residue (residue number reindexed from 1): H49 H51 H130
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 1.15.1.1: superoxide dismutase.

Gene Ontology

Molecular Function

• GO:0004784 superoxide dismutase activity
• GO:0005507 copper ion binding
• GO:0016209 antioxidant activity
• GO:0016491 oxidoreductase activity
• GO:0042802 identical protein binding
• GO:0046872 metal ion binding

Biological Process

• GO:0006801 superoxide metabolic process
• GO:0019430 removal of superoxide radicals

Cellular Component

• GO:0042597 periplasmic space

External links

• PDB: RCSB:6vbs, PDBe:6vbs, PDBj:6vbs
• PDBsum: 6vbs
• UniProt: P0CW86|SODC1_SALTY Superoxide dismutase [Cu-Zn] 1 (Gene Name=sodC1)