Structure of PDB 6ude Chain D Binding Site BS02

Receptor Information

>6ude Chain D (length=492) Species: 1338011 (Elizabethkingia anophelis NUHP1)

EKLILALDQGTTSSRAILFNKSGEIKFVSQKSFEQIFPTPGWVEHDPNEI
WSSQISVAAEVIAKAGEVAAIGITNQRETTVVWDRHTSEPIYNAIVWQDR
RTSKYCDELKSQGHTDEIKQKTGLVLDAYFSATKLKWILDNVEGAREKAE
AGDLCFGTVDTWLIWKLTRGKMFITDVSNASRTMMFNIRTMDWDDDLLKL
FNIPRAILPEVKQSSEVYGETSTTLFSTKIPIAGIAGDQQAALFGQMCTK
PGMVKNTYGTGCFLLMNTGNEAVYSKNNLLTTVAWKINGEVSYALEGSVF
VGGAAIQWLRDGLKIIHDSSEVSTLAETVEDNGGVYFVPALTGLGAPYWD
QYARGTIIGVTRGTTDGHIARATLEGIAFQVYDIVKAMEADAETQSTELR
VDGGASASNLLMQIQSDLFGFKIIRPKTLETTALGAAYLAGLAVGFWESI
DEIQSQWIIEKEFTPKEDKTKIDNMVSFWHKAVKRSQAWIED

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 6ude Chain D Residue 602

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6ude Crystal structure of Glycerol kinase from Elizabethkingia anophelis NUHP1 in complex with ADP and glycerol
• Resolution: 1.95 Å
• Binding residue (original residue number in PDB): G13 T15
• Binding residue (residue number reindexed from 1): G10 T12
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.7.1.30: glycerol kinase.

Gene Ontology

Molecular Function

• GO:0004370 glycerol kinase activity
• GO:0005524 ATP binding
• GO:0016301 kinase activity
• GO:0016773 phosphotransferase activity, alcohol group as acceptor
• GO:0046872 metal ion binding

Biological Process

• GO:0005975 carbohydrate metabolic process
• GO:0006071 glycerol metabolic process
• GO:0006072 glycerol-3-phosphate metabolic process
• GO:0016310 phosphorylation
• GO:0019563 glycerol catabolic process

Cellular Component

• GO:0005829 cytosol

External links

• PDB: RCSB:6ude, PDBe:6ude, PDBj:6ude
• PDBsum: 6ude
• UniProt: A0A077EJ65