Structure of PDB 6ubr Chain D Binding Site BS02

Receptor Information
>6ubr Chain D (length=776) Species: 1365250 (Pseudoalteromonas luteoviolacea DSM 6061) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
CQYKIYPPLGIARVGNGPAIKPLSLSTPEVPWAHLYDTNVQYLVTQQELE
QLLEEAFGGNVINEISQIKTKLKFKQEEIETITGLLGLSHLVPQQQLSRS
LDNLVQQIKGALLKVLSDHYLHAVKKQAQNFYIYKCDEQGNPVEKLKLTD
GDKVTWRVEVANKKSFWYDYNNALDLSLHTQGSGNLSKNVSKHRLAPAMT
AKRRNPNVITNSLRKQLVISSQGSVSSDNNTQVPLRGKFPANRHNVLQGS
IECDNEGVLRFYAGNGISQALSPSSLNTDFADNSNWFDDICDGRVTAVVE
LKNGDTFEIQDEQSSAWVATTPPDYAPQIEPIVTMYDMVSGAALKEQDLD
NLTTQFSDVFPILYRLYRMQWVNQADFTDNAVNTQIRELNSELGFAQLLD
NSASAKSLREGIFNQFRNPLFDQDIDVDDPGQSSNEWVSNSRIIPSKDET
NIAAKPATSSLKLPFYPNDGIDYPGSPVQWFAIPPFMYQHLQNWAAGDFS
VTQVEKESANTIEELGLFYSEQFKNSPNSALLCARGALDALYGGGFHPGV
ELTWPMRHNLIYSQNDYVSSVTPEINLLGLREFRLKQDLQGLNSPNMYQD
FGHVIAVDNVTASIDPNSDAAWLWRSTPGDLTKWMGIPWQSAAASCQAVY
TPEDFPIPSWWAANLPVHVLPLARYNKFKDSQSADLPEINGMTHSIAQGM
SEETFEHLRLEQFSQRLDWLHTADLGFVGYHAEGGYTNGLIQMVSQWKNM
AMVMARPVENPGSSGIPNVVYVAYSQ
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6ubr Chain D Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ubr Kinetic and structural evidence that Asp-678 plays multiple roles in catalysis by the quinoprotein glycine oxidase.
Resolution1.96 Å
Binding residue
(original residue number in PDB)		D360 A362 I365 A699 N700
Binding residue
(residue number reindexed from 1)		D324 A326 I329 A663 N664
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6ubr, PDBe:6ubr, PDBj:6ubr
PDBsum6ubr
PubMed31615898
UniProtA0A161XU12

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