Structure of PDB 6rkc Chain D Binding Site BS02

Receptor Information
>6rkc Chain D (length=372) Species: 519849 (Ureaplasma urealyticum serovar 7 str. ATCC 27819) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KKIITSESVGAGHPDKICDQISDAILDECLSQDQNSRVACEVLACNRLIV
IAGEITTHAYVDVVKTAWEIIKPLGYDENDFTIISNVNKQSVDIAQSVDK
TNKNLIGAGDQGIVFGYACDETPQYMPLTSVLAHELLKEIERQRRSKEFI
KIQADMKSQVSIDYSNSTPLIETMLVSIQHDEDYDVEYFNKKVSAIMEQI
AKKYNLNTNFKKIINSSGRFVIGGPIGDTGLTGRKIIVDTYGGVGHHGGG
AFSGKDPTKVDRSASYFARWIAKNVVAAKLAKQCEIQLAFAIGQPQPVAM
YVNTFNTNLIDETKIFEAIKKSFNFDIKTFINDLNLWTTKYLPVATYGHF
GRDDLDLSWEKLNKVEDLIKNS
Ligand information
Ligand IDSAM
InChIInChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/t7-,8+,10+,11+,14+,27-/m0/s1
InChIKeyMEFKEPWMEQBLKI-FCKMPRQPSA-N
SMILES
SoftwareSMILES
CACTVS 3.341C[S@@+](CC[C@H](N)C([O-])=O)C[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23
OpenEye OEToolkits 1.5.0C[S+](CCC(C(=O)[O-])N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O
CACTVS 3.341C[S+](CC[CH](N)C([O-])=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23
OpenEye OEToolkits 1.5.0C[S@@+](CC[C@@H](C(=O)[O-])N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O
ACDLabs 10.04[O-]C(=O)C(N)CC[S+](C)CC3OC(n2cnc1c(ncnc12)N)C(O)C3O
FormulaC15 H22 N6 O5 S
NameS-ADENOSYLMETHIONINE
ChEMBLCHEMBL1235831
DrugBank
ZINC
PDB chain6rkc Chain C Residue 404 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6rkc The interdimeric interface controls function and stability of Ureaplasma urealiticum methionine S-adenosyltransferase.
Resolution2.56 Å
Binding residue
(original residue number in PDB)		E57 Q93 D96 K262
Binding residue
(residue number reindexed from 1)		E54 Q90 D93 K259
Annotation score5
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 21:42:14 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6rkc', asym_id = 'D', bs = 'BS02', title = 'The interdimeric interface controls function and...sma urealiticum methionine S-adenosyltransferase.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6rkc', asym_id='D', bs='BS02', title='The interdimeric interface controls function and...sma urealiticum methionine S-adenosyltransferase.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004478,0005524,0006556', uniprot = '', pdbid = '6rkc', asym_id = 'D'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004478,0005524,0006556', uniprot='', pdbid='6rkc', asym_id='D')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>