Structure of PDB 6q8u Chain D Binding Site BS02

Receptor Information
>6q8u Chain D (length=122) Species: 224325 (Archaeoglobus fulgidus DSM 4304) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPEASYVRFEVPEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKL
VYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAA
IINEGELRKELGSLVEKIKGLQ
Ligand information
>6q8u Chain B (length=21) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cggcgaagaaccggggagccg
.....................
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6q8u Effect of methylation of adenine N6on kink turn structure depends on location.
Resolution1.99 Å
Binding residue
(original residue number in PDB)		N33 E34 K37 R41
Binding residue
(residue number reindexed from 1)		N37 E38 K41 R45
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0004526 ribonuclease P activity
GO:0019843 rRNA binding
Biological Process
GO:0001682 tRNA 5'-leader removal
GO:0006412 translation
GO:0008033 tRNA processing
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6q8u, PDBe:6q8u, PDBj:6q8u
PDBsum6q8u
PubMed31234702
UniProtO29494|RL7A_ARCFU Large ribosomal subunit protein eL8 (Gene Name=rpl7ae)

[Back to BioLiP]