Structure of PDB 6klv Chain D Binding Site BS02

Receptor Information
>6klv Chain D (length=134) Species: 224324 (Aquifex aeolicus VF5) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FISIGIGALGAVGGLGALYALVRVMLEPSEIAALGAKTEIDVSKIQPMQV
RVTSWKGKTLFAIRLPKDYEILKGHDVFALVGVCTHLGCIPLWKPVFHCP
CHGGLYTPYGDVIGGPPPRPLFIPPQKLEGNKLI
Ligand information
Ligand IDDLX
InChIInChI=1S/C45H66O2/c1-34(2)17-11-18-35(3)19-12-20-36(4)21-13-22-37(5)23-14-24-38(6)25-15-26-39(7)27-16-28-40(8)31-32-41-33-44(46)42-29-9-10-30-43(42)45(41)47/h9-10,21,23,25,27,29-31,33-35H,11-20,22,24,26,28,32H2,1-8H3/b36-21-,37-23-,38-25-,39-27+,40-31+/t35-/m1/s1
InChIKeyHQTZEMLTZXAZEE-ZTUUOAHYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(C)CCC[C@@H](C)CCCC(/C)=C\CCC(/C)=C\CCC(/C)=C\CCC(/C)=C/CCC(/C)=C/CC1=CC(=O)c2ccccc2C1=O
OpenEye OEToolkits 2.0.7CC(C)CCCC(C)CCCC(=CCCC(=CCCC(=CCCC(=CCCC(=CCC1=CC(=O)c2ccccc2C1=O)C)C)C)C)C
CACTVS 3.385CC(C)CCC[CH](C)CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCCC(C)=CCC1=CC(=O)c2ccccc2C1=O
OpenEye OEToolkits 2.0.7C[C@H](CCCC(C)C)CCC/C(=C\CC/C(=C\CC/C(=C\CC/C(=C/CC/C(=C/CC1=CC(=O)c2ccccc2C1=O)/C)/C)/C)/C)/C
FormulaC45 H66 O2
Name2-[(2~{E},6~{E},10~{Z},14~{Z},18~{Z},23~{R})-3,7,11,15,19,23,27-heptamethyloctacosa-2,6,10,14,18-pentaenyl]naphthalene-1,4-dione
ChEMBL
DrugBank
ZINC
PDB chain6klv Chain D Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6klv A 3.3 angstrom -Resolution Structure of Hyperthermophilic Respiratory Complex III Reveals the Mechanism of Its Thermal Stability.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		A24 Y26 A27 L28 R30
Binding residue
(residue number reindexed from 1)		A17 Y19 A20 L21 R23
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) H138
Catalytic site (residue number reindexed from 1) H102
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008121 ubiquinol-cytochrome-c reductase activity
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051537 2 iron, 2 sulfur cluster binding
Biological Process
GO:1902600 proton transmembrane transport
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6klv, PDBe:6klv, PDBj:6klv
PDBsum6klv
PubMed31778296
UniProtO66460

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