Structure of PDB 6k1l Chain D Binding Site BS02

Receptor Information
>6k1l Chain D (length=382) Species: 391008 (Stenotrophomonas maltophilia R551-3) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RALALATLAIHGGQSPDPSTGAVMPPIYATSTYAQSSPGEHQGFAYSRTH
NPTRFAYERCVASLEGGTRGFAFASGMAASSTVIELLDAGSHVVAMDDIY
GGSFRLFERVRRRTAGLDFSFVDLTDLAAFEASITPKTKMVWIETPTNPM
LKIVDIAAVAAIAKRHGLIVVVDNTFASPMLQRPLELGADLVLHSATKYL
NGHSDMVGGMVVVGDNAELAEQMAFLQNSVGGVQGPFDSFLALRGLKTLP
LRMKAHCANALALAQWLEKHPAVEKVIYPGLASHPQHELAGKQMAGYGGI
VSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVAR
REQLGISDALVRLSVGVEDLGDLQVDLGEALK
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain6k1l Chain D Residue 600 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6k1l Structural characterization of cystathionine gamma-lyase smCSE enables aqueous metal quantum dot biosynthesis.
Resolution2.46 Å
Binding residue
(original residue number in PDB)		G84 M85 Y108 D181 S203 T205 K206
Binding residue
(residue number reindexed from 1)		G76 M77 Y100 D173 S195 T197 K198
Annotation score1
Enzymatic activity
Enzyme Commision number 4.4.1.1: cystathionine gamma-lyase.
Gene Ontology
Molecular Function
GO:0003962 cystathionine gamma-synthase activity
GO:0004123 cystathionine gamma-lyase activity
GO:0016829 lyase activity
GO:0016846 carbon-sulfur lyase activity
GO:0030170 pyridoxal phosphate binding
GO:0044540 L-cystine L-cysteine-lyase (deaminating)
GO:0080146 L-cysteine desulfhydrase activity
Biological Process
GO:0019346 transsulfuration
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6k1l, PDBe:6k1l, PDBj:6k1l
PDBsum6k1l
PubMed33497694
UniProtB4SII9

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