Structure of PDB 6iy8 Chain D Binding Site BS02

Receptor Information

>6iy8 Chain D (length=469) Species: 303 (Pseudomonas putida) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MDPEFTNLIHFQSTEGKIWLGEQRMLLLQVSAMASFRREMVNTLGIERAK
GFFLRQGYQSGLKDAELARKLRPNASEYDMFLAGPQLHSLKGLVKVRPTE
VDIDKESGRFYAEMEWIDSFEVEISQTDLGQMQDPVCWTLLGYACAYSSA
FMGREIIFKEVSCRGCGGDKCRVIGKPAEEWDDVASFKQYFKNDPIIEEL
YELQSQLVSLRTNLDKQEGQYYGIGQTPAYQTVRNMMDKAAQGKVSVLLL
GETGVGKEVIARSVHLRSKRAAEPFVAVNCAAIPPDLIESELFGVEKGAF
TGATQSRMGRFERADKGTIFLDEVIELSPRAQASLLRVLQEGELERVGDN
RTRKIDVRVIAATHEDLAEAVKAGRFRADLYYRLNVFPVAIPALRERRED
IPLLVEHFLQRFHQEYGKRTLGLSDKALEACLHYSWPGNIRELENVIERG
IILTDPNESISVQALFPRA

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

6iy8 Chain D Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6iy8 Tetrameric architecture of an active phenol-bound form of the AAA+transcriptional regulator DmpR.
Resolution	3.42 Å
Binding residue (original residue number in PDB)	C149 E172 C175 C183
Binding residue (residue number reindexed from 1)	C137 E160 C163 C171
Annotation score	1

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005524	ATP binding
GO:0008134	transcription factor binding
GO:0016887	ATP hydrolysis activity

	Biological Process
GO:0006355	regulation of DNA-templated transcription

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Molecular Function

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Biological Process

External links

PDB	RCSB:6iy8, PDBe:6iy8, PDBj:6iy8
PDBsum	6iy8
PubMed	32483114
UniProt	Q7WSM9

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