Structure of PDB 6cqj Chain D Binding Site BS02

Receptor Information

>6cqj Chain D (length=182) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

IKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGR
FASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELR
EPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHY
LPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDT

Ligand information

>6cqj Chain F (length=13) Species: 11706 (HIV-1 M:B_HXB2R) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

RFYKTLRAEQASQ

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6cqj CD4+T cell-mediated HLA class II cross-restriction in HIV controllers.
Resolution	2.75 Å
Binding residue (original residue number in PDB)	Q9 F32 A52 S53 F54 E55 N62 V65 N69 I72 R76
Binding residue (residue number reindexed from 1)	Q9 F32 A52 S53 F54 E55 N62 V65 N69 I72 R76

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Biological Process
GO:0006955	immune response
GO:0019882	antigen processing and presentation

	Cellular Component
GO:0016020	membrane
GO:0042613	MHC class II protein complex

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Biological Process

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Cellular Component

External links

PDB	RCSB:6cqj, PDBe:6cqj, PDBj:6cqj
PDBsum	6cqj
PubMed	29884618
UniProt	P01903\|DRA_HUMAN HLA class II histocompatibility antigen, DR alpha chain (Gene Name=HLA-DRA)

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