Structure of PDB 5yj9 Chain D Binding Site BS02

Receptor Information
>5yj9 Chain D (length=343) Species: 7070 (Tribolium castaneum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPIAKGTNGVVYSAKVKDYPFALKMMFNYDIQDNSMEILKAMYRETVPAR
MYYKHLPPHPNIVAIFSVFTMSLFLLMKRYDCNLQSFLSTAPSTRTSLLL
LAQLLEGVAHMTAHGIAHRDLKSDNLLLDTSEPESPILVISDFGCCLADK
TNGLSLPYTDYEMDKGGNEALMAPEIICQKPGTFSVLNYSKADLWAVGAI
AYEIFNCHNPFYGPSRLKNFNYKEGDLPKLPDEVPTVIQALVANLLKRNP
NKRLDPEVAANVCQLFLWAPSTWLKPGLKVPTSGEILQWLLSLTTKVLCE
KFERNWRRTYPEYLLISSFLCRAKLANVRNALHWIQENLPELD
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5yj9 Chain D Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5yj9 Structural insights into ubiquitin phosphorylation by PINK1.
Resolution2.53 Å
Binding residue
(original residue number in PDB)		N342 D359
Binding residue
(residue number reindexed from 1)		N125 D142
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.11.1: non-specific serine/threonine protein kinase.
Gene Ontology
Molecular Function
GO:0004672 protein kinase activity
GO:0005524 ATP binding
Biological Process
GO:0006468 protein phosphorylation

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Molecular Function
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Biological Process
External links
PDB RCSB:5yj9, PDBe:5yj9, PDBj:5yj9
PDBsum5yj9
PubMed29991771
UniProtD6WMX4|PINK1_TRICA Serine/threonine-protein kinase Pink1, mitochondrial (Gene Name=Pink1)

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