Structure of PDB 5ybb Chain D Binding Site BS02

Receptor Information
>5ybb Chain D (length=390) Species: 273068 (Caldanaerobacter subterraneus subsp. tengcongensis MB4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PYKLPPGWRWVRLGEVCLPTERRDPTKNPSTYFVYVDISAIDSTVGKIVS
PKEILGQHAPSRARKVIRSGDVIFATTRPYLKNIALVPPDLDGQICSTGF
CVIRANREFAEPEFLFHLCRSDFITNQLTASKMRGTSYPAVTDNDVYNTL
IPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFP
HPGADLPPGWRWVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQGKADFGD
LHPTPRIWCSAPQKVARPGDVLISVRAPVGSTNVANLACCIGRGLAALRP
RDSLERFWLLYYLHYLEPELSKMTFNAITKKDLQNVFIPLPPLEEQRRIV
AYLDQIQQQVAALKRAQAETEAELKRLEQAILDKAFRGDL
Ligand information
Receptor-Ligand Complex Structure
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PDB5ybb Structural basis underlying complex assembly and conformational transition of the type I R-M system.
Resolution3.2 Å
Binding residue
(original residue number in PDB)		R26 K31 Y142 T146
Binding residue
(residue number reindexed from 1)		R22 K27 Y138 T142
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004519 endonuclease activity
Biological Process
GO:0009307 DNA restriction-modification system

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Molecular Function
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Biological Process
External links
PDB RCSB:5ybb, PDBe:5ybb, PDBj:5ybb
PDBsum5ybb
PubMed28973912
UniProtQ8R9Q6

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