Structure of PDB 5yb4 Chain D Binding Site BS02

Receptor Information
>5yb4 Chain D (length=36) Species: 11676 (Human immunodeficiency virus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGIVQQQNNLLRAIKAQQHLLQRTVWGIKQLQARIL
Ligand information
>5yb4 Chain I (length=23) Species: 11676 (Human immunodeficiency virus 1) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ELTWEEWEKKIEEYTKKIEEILK
Receptor-Ligand Complex Structure
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PDB5yb4 Structural Insights into the Mechanisms of Action of Short-Peptide HIV-1 Fusion Inhibitors Targeting the Gp41 Pocket
Resolution2.5 Å
Binding residue
(original residue number in PDB)
R46 H53 L54 R57 W60 G61
Binding residue
(residue number reindexed from 1)
R12 H19 L20 R23 W26 G27
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:5yb4, PDBe:5yb4, PDBj:5yb4
PDBsum5yb4
PubMed29535974
UniProtP04578|ENV_HV1H2 Envelope glycoprotein gp160 (Gene Name=env)

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