Structure of PDB 5yaq Chain D Binding Site BS02

Receptor Information
>5yaq Chain D (length=362) Species: 1197861 (Paracoccus laeviglucosivorans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ALGVALIGTGFMGKCHAMAWRNVATAFGGLPPRLEVLADMPADKAHSLAS
SFGFARGTADWREAVSDPAVDVVSITTPNGLHREMAEAALAAGKHVWLEK
PMALSVEDAQAMEAAARASDRRTIIGYNYTRSPAFRAAVDLIAEGAIGRP
IHFRGMYDEDYMADWSWRLTRKDGGLGALGDLGCHLVSVMVSLMGPVARV
YAQADTVITDRPHQGGTARVENEDQAQALIRFASGTSGEFSCSRVARGYR
CRLAWEVQGTEGTLRFDQERMNELWLYQPGRPEIDGFRRILTGPAQPGFA
AFCPGGGHNFGFNEQKVVEAEMLRQAIAGRGKAWPDFTDGLTIERVIHGM
ATSAQTGQPVNF
Ligand information
Ligand IDISE
InChIInChI=1S/C6H10O6/c7-1-2(8)4(10)6(12)5(11)3(1)9/h1-5,7-11H/t1-,2-,3+,4+,5-
InChIKeyVYEGBDHSGHXOGT-HYFGLKJPSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1(C(C(C(=O)C(C1O)O)O)O)O
ACDLabs 12.01O=C1C(O)C(O)C(O)C(O)C1O
CACTVS 3.370O[CH]1[CH](O)[CH](O)C(=O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.0[C@H]1([C@H](C(=O)[C@H]([C@@H](C1O)O)O)O)O
CACTVS 3.370O[C@H]1[C@H](O)[C@@H](O)C(=O)[C@@H](O)[C@@H]1O
FormulaC6 H10 O6
Name(2R,3S,4s,5R,6S)-2,3,4,5,6-pentahydroxycyclohexanone;
Inosose;
Myo-inosose
ChEMBL
DrugBank
ZINC
PDB chain5yaq Chain D Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5yaq Structural basis of L-glucose oxidation by scyllo-inositol dehydrogenase: Implications for a novel enzyme subfamily classification
Resolution1.99 Å
Binding residue
(original residue number in PDB)
K106 Y135 Y163 E165 R178 D191 H195
Binding residue
(residue number reindexed from 1)
K100 Y129 Y157 E159 R168 D181 H185
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding

View graph for
Molecular Function
External links
PDB RCSB:5yaq, PDBe:5yaq, PDBj:5yaq
PDBsum5yaq
PubMed29799855
UniProtK7ZP76

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