Structure of PDB 5xm8 Chain D Binding Site BS02

Receptor Information
>5xm8 Chain D (length=175) Species: 10498 (African swine fever virus BA71V) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMLTLIQGKKIVNHLRSRLAFEYNGQLIKILSKNIVAVGSLRREEKMLND
VDLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVLFIEWEKKTYQL
DLFTALAEEKPYAIFHFTGPVSYLIRIRAALKKKNYKLNQYGLFKNQTLV
PLKITTEKELIKELGFTYRIPKKRL
Ligand information
Receptor-Ligand Complex Structure
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PDB5xm8 Crystal structure of an RNA-cleaving DNAzyme.
Resolution2.55 Å
Binding residue
(original residue number in PDB)		V80 C81 G82 E83 R84 V120 I124 R127 K131 K136 L137 N138 Q139 Y140
Binding residue
(residue number reindexed from 1)		V81 C82 G83 E84 R85 V121 I125 R128 K132 K137 L138 N139 Q140 Y141
Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006259 DNA metabolic process
GO:0006281 DNA repair
GO:0006303 double-strand break repair via nonhomologous end joining
GO:0071897 DNA biosynthetic process
Cellular Component
GO:0044423 virion component

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Cellular Component
External links
PDB RCSB:5xm8, PDBe:5xm8, PDBj:5xm8
PDBsum5xm8
PubMed29222499
UniProtP42494|DPOLX_ASFB7 Repair DNA polymerase X (Gene Name=Ba71V-97)

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