Structure of PDB 5uie Chain D Binding Site BS02

Receptor Information
>5uie Chain D (length=311) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSG
ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLF
AMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ
GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV
LTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSETRK
LTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDL
LKQEQFTRDFG
Ligand information
Ligand IDADP
InChIInChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyXTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
FormulaC10 H15 N5 O10 P2
NameADENOSINE-5'-DIPHOSPHATE
ChEMBLCHEMBL14830
DrugBankDB16833
ZINCZINC000012360703
PDB chain5uie Chain D Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5uie Structural basis of protein translocation by the Vps4-Vta1 AAA ATPase.
Resolution5.7 Å
Binding residue
(original residue number in PDB)		D134 V135 A136 P175 G176 G178 K179 S180 Y181 M307
Binding residue
(residue number reindexed from 1)		D16 V17 A18 P57 G58 G60 K61 S62 Y63 M189
Annotation score5
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
Biological Process
GO:0001778 plasma membrane repair
GO:0006914 autophagy
GO:0006997 nucleus organization
GO:0007033 vacuole organization
GO:0015031 protein transport
GO:0016125 sterol metabolic process
GO:0016197 endosomal transport
GO:0016236 macroautophagy
GO:0031468 nuclear membrane reassembly
GO:0032511 late endosome to vacuole transport via multivesicular body sorting pathway
GO:0036258 multivesicular body assembly
GO:0045053 protein retention in Golgi apparatus
GO:0045324 late endosome to vacuole transport
GO:0061709 reticulophagy
GO:0061764 late endosome to lysosome transport via multivesicular body sorting pathway
GO:0061952 midbody abscission
GO:0070676 intralumenal vesicle formation
GO:0071985 multivesicular body sorting pathway
GO:0090148 membrane fission
GO:0097352 autophagosome maturation
Cellular Component
GO:0005643 nuclear pore
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005783 endoplasmic reticulum
GO:0005886 plasma membrane
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0030496 midbody
GO:1904949 ATPase complex
GO:1990621 ESCRT IV complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5uie, PDBe:5uie, PDBj:5uie
PDBsum5uie
PubMed28379137
UniProtP52917|VPS4_YEAST Vacuolar protein sorting-associated protein 4 (Gene Name=VPS4)

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