Structure of PDB 5o6g Chain D Binding Site BS02

Receptor Information
>5o6g Chain D (length=178) Species: 2275 (Desulfurococcus mucosus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHFAP
LMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMQERIRLFNMR
EQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLD
DHRHGVYVLNISLRDRIKFVHTILSSHL
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5o6g Structure and dynamics of mesophilic variants from the homing endonuclease I-DmoI.
Resolution2.75 Å
Binding residue
(original residue number in PDB)
N32 R33 S34 E35 Y36 R37 S67 K68 Q70 D75 R81 S83 S84 K85 A116 E117 D119 R126 W128 N129 K130 D155 H158 V160
Binding residue
(residue number reindexed from 1)
N28 R29 S30 E31 Y32 R33 S63 K64 Q66 D71 R77 S79 S80 K81 A112 E113 D115 R122 W124 N125 K126 D151 H154 V156
Enzymatic activity
Enzyme Commision number 3.1.-.-
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
Biological Process
GO:0006314 intron homing
GO:0016539 intein-mediated protein splicing

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:5o6g, PDBe:5o6g, PDBj:5o6g
PDBsum5o6g
PubMed29177929
UniProtP21505|DMO1_DESMO Homing endonuclease I-DmoI

[Back to BioLiP]