Structure of PDB 5jcj Chain D Binding Site BS02
Receptor Information
>5jcj Chain D (length=248) Species:
5702
(Trypanosoma brucei brucei) [
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EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKE
RSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTP
LVKTVETQVAELIGTNAIAPFLLTMSFAQRQSNLSIVNLCDAMVDQPCMA
FSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPVAMGEEEKDK
WRRKVPLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGLSLVHA
Ligand information
Ligand ID
6JM
InChI
InChI=1S/C15H10O6/c16-8-2-4-12-9(6-8)13(19)14(20)15(21-12)7-1-3-10(17)11(18)5-7/h1-6,16-18,20H
InChIKey
BXPBSBBFPNTFFT-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.385
Oc1ccc2OC(=C(O)C(=O)c2c1)c3ccc(O)c(O)c3
OpenEye OEToolkits 2.0.4
c1cc(c(cc1C2=C(C(=O)c3cc(ccc3O2)O)O)O)O
ACDLabs 12.01
c1c(O)c(O)ccc1C=3Oc2ccc(O)cc2C(C=3O)=O
Formula
C15 H10 O6
Name
2-(3,4-dihydroxyphenyl)-3,6-dihydroxy-4H-1-benzopyran-4-one
ChEMBL
CHEMBL1224325
DrugBank
ZINC
ZINC000000008662
PDB chain
5jcj Chain D Residue 302 [
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Receptor-Ligand Complex Structure
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PDB
5jcj
Profiling of Flavonol Derivatives for the Development of Antitrypanosomatidic Drugs.
Resolution
1.76 Å
Binding residue
(original residue number in PDB)
S95 F97 Y174 V206 L208 L209 W221
Binding residue
(residue number reindexed from 1)
S94 F96 Y154 V186 L188 L189 W201
Annotation score
1
Binding affinity
PDBbind-CN
: -logKd/Ki=4.42,IC50=38uM
Enzymatic activity
Catalytic site (original residue number in PDB)
R14 D161 Y174 K178
Catalytic site (residue number reindexed from 1)
R13 D141 Y154 K158
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000166
nucleotide binding
GO:0016491
oxidoreductase activity
GO:0047040
pteridine reductase activity
View graph for
Molecular Function
External links
PDB
RCSB:5jcj
,
PDBe:5jcj
,
PDBj:5jcj
PDBsum
5jcj
PubMed
27411733
UniProt
O76290
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