Structure of PDB 5hn9 Chain D Binding Site BS02
Receptor Information
>5hn9 Chain D (length=347) Species:
126793
(Plasmodium vivax Sal-1) [
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AFFRNMYDKYRDAFLSHLNEYSLEEEIKEHISKYYKLLFDYNCLGGKNNR
GILVILIYEYVKNRINSSEWEKAACLAWCIEILQAAFLVADDIMDKGEMR
RNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFR
DATLKTIIGQHLDTNIFSDKYIDVNNINPVIDINMINFGVYKNIVIHKTA
YYSFFLPIVCGMLLAGIDNLIYKKIEDISMLMGEYFQIHDDYLDIFGDST
KTGKVSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSL
YEQYKIRKHYESYEKAQKAKILSAINELHHEGIEYVLKYLLEILFTG
Ligand information
Ligand ID
04W
InChI
InChI=1S/C24H31NO6/c1-2-3-4-5-6-7-8-9-15-30-21-12-10-11-19(16-21)18-31-23-14-13-20(25(28)29)17-22(23)24(26)27/h10-14,16-17H,2-9,15,18H2,1H3,(H,26,27)
InChIKey
JVCSVSPXQNVWLW-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 12.01
[O-][N+](=O)c2ccc(OCc1cccc(OCCCCCCCCCC)c1)c(c2)C(=O)O
CACTVS 3.370
CCCCCCCCCCOc1cccc(COc2ccc(cc2C(O)=O)[N+]([O-])=O)c1
OpenEye OEToolkits 1.7.2
CCCCCCCCCCOc1cccc(c1)COc2ccc(cc2C(=O)O)[N+](=O)[O-]
Formula
C24 H31 N O6
Name
2-{[3-(decyloxy)benzyl]oxy}-5-nitrobenzoic acid;
BPH-1186
ChEMBL
DrugBank
ZINC
ZINC000584904658
PDB chain
5hn9 Chain D Residue 401 [
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Receptor-Ligand Complex Structure
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PDB
5hn9
Dynamic Structure and Inhibition of a Malaria Drug Target: Geranylgeranyl Diphosphate Synthase.
Resolution
2.12 Å
Binding residue
(original residue number in PDB)
G80 K81 R84 Q119 F122 L123 M129 R135 R136 I192 Y247 F283 K301
Binding residue
(residue number reindexed from 1)
G46 K47 R50 Q84 F87 L88 M94 R100 R101 I157 Y202 F236 K254
Annotation score
1
Binding affinity
MOAD
: ic50=50uM
Enzymatic activity
Catalytic site (original residue number in PDB)
K81 A121 D126 D130 R135 D198 K243 F283 D287 D288
Catalytic site (residue number reindexed from 1)
K47 A86 D91 D95 R100 D163 K198 F236 D240 D241
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0004161
dimethylallyltranstransferase activity
GO:0004337
geranyltranstransferase activity
GO:0004659
prenyltransferase activity
GO:0016740
transferase activity
GO:0016765
transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0046872
metal ion binding
Biological Process
GO:0008299
isoprenoid biosynthetic process
GO:0045337
farnesyl diphosphate biosynthetic process
Cellular Component
GO:0005737
cytoplasm
GO:0016020
membrane
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:5hn9
,
PDBe:5hn9
,
PDBj:5hn9
PDBsum
5hn9
PubMed
27564465
UniProt
A5K4U6
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