Structure of PDB 5fyr Chain D Binding Site BS02
Receptor Information
>5fyr Chain D (length=297) Species:
306
(Pseudomonas sp.) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
QESPAFIDPASWNTPFNGIAQVACHNCYEKQYANTFSSVLDSVRTLELDF
WDQRDAVSGGSPHHWFVRHNPGTLFQSGNDNNCTGDGTGKNDLEACLNDV
KNWSDKHPGHFPITLILDKKQGWSKESSGRTPKDFDELVARVFQGKLFTP
QDLATHIGSGAGALQGNLKGKSWPTANDLQGKVLLVLNHSENQKLSQYAE
ARTSKAKVFISPVTNGQNDISGKVSGMSSQSSGYVAMNNMGKGDKSWAKQ
AFAYSHIGRVWGDDEVSFAQHINQKINLSAYYRFAAQSAGGYRIRPF
Ligand information
Ligand ID
CA
InChI
InChI=1S/Ca/q+2
InChIKey
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
Formula
Ca
Name
CALCIUM ION
ChEMBL
DrugBank
DB14577
ZINC
PDB chain
5fyr Chain D Residue 401 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5fyr
The structure of a calcium-dependent phosphoinositide-specific phospholipase C from Pseudomonas sp. 62186, the first from a Gram-negative bacterium.
Resolution
1.45 Å
Binding residue
(original residue number in PDB)
N27 E48 D50 D119
Binding residue
(residue number reindexed from 1)
N26 E47 D49 D118
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0008081
phosphoric diester hydrolase activity
GO:0046872
metal ion binding
Biological Process
GO:0006629
lipid metabolic process
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:5fyr
,
PDBe:5fyr
,
PDBj:5fyr
PDBsum
5fyr
PubMed
28045383
UniProt
A0A1S4NYD4
[
Back to BioLiP
]