Structure of PDB 5adz Chain D Binding Site BS02

Receptor Information
>5adz Chain D (length=552) Species: 10141 (Cavia porcellus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GIIPKKRQELMKWNGWGYNDSKFFLNKKGQLELTGKRYPLSGVALPTFKD
WIQNTFGINLDHKTTSKASLNPSDTPPSIVNEDFLHELKKTNISYSQEAD
DRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNL
CIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEA
GITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIE
DLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIK
IRPTPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNQQFQFGH
ALKPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYL
LTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKG
VQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEI
LANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRN
LL
Ligand information
Ligand IDKQS
InChIInChI=1S/C18H18FN3O2/c1-11(13-4-2-3-5-14(13)19)8-17(23)20-10-12-6-7-15-16(9-12)22-18(24)21-15/h2-7,9,11H,8,10H2,1H3,(H,20,23)(H2,21,22,24)/t11-/m0/s1
InChIKeyJYQMTEASQYBLAO-NSHDSACASA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CC(CC(=O)NCc1ccc2c(c1)NC(=O)N2)c3ccccc3F
OpenEye OEToolkits 1.7.6C[C@@H](CC(=O)NCc1ccc2c(c1)NC(=O)N2)c3ccccc3F
CACTVS 3.385C[C@@H](CC(=O)NCc1ccc2NC(=O)Nc2c1)c3ccccc3F
CACTVS 3.385C[CH](CC(=O)NCc1ccc2NC(=O)Nc2c1)c3ccccc3F
FormulaC18 H18 F N3 O2
Name(3S)-3-(2-fluorophenyl)-N-((2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)methyl)butanamide)
ChEMBL
DrugBank
ZINC
PDB chain5adz Chain D Residue 888 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB5adz Discovery of Inhibitors for the Ether Lipid-Generating Enzyme Agps as Anti-Cancer Agents.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		D303 I511 M514 R515 G525 E526 S527 Y578
Binding residue
(residue number reindexed from 1)		D223 I405 M408 R409 G419 E420 S421 Y472
Annotation score1
Enzymatic activity
Enzyme Commision number 2.5.1.26: alkylglycerone-phosphate synthase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008609 alkylglycerone-phosphate synthase activity
GO:0016740 transferase activity
GO:0050660 flavin adenine dinucleotide binding
GO:0071949 FAD binding
Biological Process
GO:0006629 lipid metabolic process
GO:0008610 lipid biosynthetic process
GO:0008611 ether lipid biosynthetic process
Cellular Component
GO:0005777 peroxisome
GO:0005778 peroxisomal membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5adz, PDBe:5adz, PDBj:5adz
PDBsum5adz
PubMed26322624
UniProtP97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal (Gene Name=AGPS)

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