Structure of PDB 4rsz Chain D Binding Site BS02

Receptor Information
>4rsz Chain D (length=104) Species: 9796 (Equus caballus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGFTYTD
ANKNKGITWKEETLMEYLENPKKYIPGTKMIFAGIKKKTEREDLIAYLKK
ATNE
Ligand information
Ligand IDCPT
InChIInChI=1S/2ClH.2H3N.Pt/h2*1H;2*1H3;/q;;;;+2/p-2
InChIKeyLXZZYRPGZAFOLE-UHFFFAOYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6[NH3][Pt]([NH3])(Cl)Cl
ACDLabs 12.01[Pt](N)(N)(Cl)Cl
CACTVS 3.385N|[Pt](|N)(Cl)Cl
FormulaCl2 H6 N2 Pt
NameCisplatin;
diammine(dichloro)platinum
ChEMBL
DrugBankDB00515
ZINC
PDB chain4rsz Chain D Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4rsz The X-ray structure of the primary adducts formed in the reaction between cisplatin and cytochrome c.
Resolution2.19 Å
Binding residue
(original residue number in PDB)		E61 E62 M65 E92
Binding residue
(residue number reindexed from 1)		E61 E62 M65 E92
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0008289 lipid binding
GO:0009055 electron transfer activity
GO:0020037 heme binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
GO:0006915 apoptotic process
GO:0018063 cytochrome c-heme linkage
GO:0043065 positive regulation of apoptotic process
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:2001056 positive regulation of cysteine-type endopeptidase activity
Cellular Component
GO:0005739 mitochondrion
GO:0005758 mitochondrial intermembrane space
GO:0005829 cytosol
GO:0070069 cytochrome complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4rsz, PDBe:4rsz, PDBj:4rsz
PDBsum4rsz
PubMed25567806
UniProtP00004|CYC_HORSE Cytochrome c (Gene Name=CYCS)

[Back to BioLiP]