Structure of PDB 4qs5 Chain D Binding Site BS02
Receptor Information
>4qs5 Chain D (length=348) Species:
279238
(Novosphingobium aromaticivorans DSM 12444) [
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DLKTGGEQGYLRIATEEAFATREIIDVYLRMIRDGTADKGMVSLWGFYAQ
SPSERATQILERLLDLGERRIADMDATGIDKAILALTSPGVQPLHDLDEA
RTLATRANDTLADACQKYPDRFIGMGTVAPQDPEWSAREIHRGARELGFK
GIQINSHTQGRYLDEEFFDPIFRALVEVDQPLYIHPATSPDSMIDPMLEA
GLDGAIFGFGVETGMHLLRLITIGIFDKYPSLQIMVGHMGEALPYWLYRL
DYMHQAGVRSQRYERMKPLKKTIEGYLKSNVLVTNSGVAWEPAIKFCQQV
MGEDRVMYAMNYPYQYVADEVRAMDAMDMSAQTKKKFFQTNAEKWFKL
Ligand information
Ligand ID
1DF
InChI
InChI=1S/C8H7NO6/c1-15-6-3-4(8(11)12)2-5(7(6)10)9(13)14/h2-3,10H,1H3,(H,11,12)
InChIKey
AEDVAGWYAKIOIM-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 12.01
[O-][N+](=O)c1cc(cc(OC)c1O)C(=O)O
CACTVS 3.385
COc1cc(cc(c1O)[N+]([O-])=O)C(O)=O
OpenEye OEToolkits 1.7.6
COc1cc(cc(c1O)[N+](=O)[O-])C(=O)O
Formula
C8 H7 N O6
Name
4-hydroxy-3-methoxy-5-nitrobenzoic acid
ChEMBL
DrugBank
ZINC
ZINC000037011453
PDB chain
4qs5 Chain D Residue 402 [
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Receptor-Ligand Complex Structure
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PDB
4qs5
Crystal Structure of 5-CARBOXYVANILLATE Decarboxylase from Novosphingobium Aromaticivorans
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
Y51 T90 H188 F212 H241 N314 Y317
Binding residue
(residue number reindexed from 1)
Y48 T87 H185 F209 H238 N311 Y314
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0016787
hydrolase activity
GO:0016829
lyase activity
GO:0016831
carboxy-lyase activity
GO:0046872
metal ion binding
Biological Process
GO:0019748
secondary metabolic process
Cellular Component
GO:0005737
cytoplasm
GO:0005829
cytosol
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Molecular Function
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Cellular Component
External links
PDB
RCSB:4qs5
,
PDBe:4qs5
,
PDBj:4qs5
PDBsum
4qs5
PubMed
UniProt
Q2GA79
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