Structure of PDB 4hgo Chain D Binding Site BS02

Receptor Information
>4hgo Chain D (length=162) Species: 226186 (Bacteroides thetaiotaomicron VPI-5482) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KEIKLILTDIDGVWTDGGMFYDQTGNEWKKFNTSDSAGIFWAHNKGIPVG
ILTGEKTEIVRRRAEKLKVDYLFQGVVDKLSAAEELCNELGINLEQVAYI
GDDLNDAKLLKRVGIAGVPASAPFYIRRLSTIFLEKRGGEGVFREFVEKV
LGINLEDFIAVI
Ligand information
Ligand IDVN4
InChIInChI=1S/3O.V/q;;-1;
InChIKeyALTWGIIQPLQAAM-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0
[O-][V](=O)=O
FormulaO3 V
Nameoxido(dioxo)vanadium
ChEMBL
DrugBank
ZINC
PDB chain4hgo Chain D Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4hgo Structural Basis for the Divergence of Substrate Specificity and Biological Function within HAD Phosphatases in Lipopolysaccharide and Sialic Acid Biosynthesis.
Resolution2.1 Å
Binding residue
(original residue number in PDB)
D10 I11 D12 T54 G55 K80
Binding residue
(residue number reindexed from 1)
D9 I10 D11 T53 G54 K79
Annotation score1
Enzymatic activity
Enzyme Commision number 3.1.3.103: 3-deoxy-D-glycero-D-galacto-nonulopyranosonate 9-phosphatase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016788 hydrolase activity, acting on ester bonds
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:4hgo, PDBe:4hgo, PDBj:4hgo
PDBsum4hgo
PubMed23848398
UniProtQ8A712|KDGGP_BACTN 2-keto-3-deoxy-D-glycero-D-galacto-9-phosphonononic acid phosphatase (Gene Name=BT_1713)

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