Structure of PDB 4d61 Chain D Binding Site BS02

Receptor Information
>4d61 Chain D (length=212) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIL
ATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQ
AESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMK
FVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPK
KPLPDHVSIVEP
Ligand information
>4d61 Chain j (length=201) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaaaaugugaucuugcuuguaaauacaauuuugagagguuaauaaauuac
aaguagugcuauuuuuguauuuagguuagcuauuuagcuuuacguuccag
gaugccuaguggcagccccacaauauccaggaagcccucucugcgguuau
ucagauuagguagucgaaaaaccuaagaaauuuaccuuaaggcuuccucg
a
<<.............<<<<<<<.<........(((((......>..>>>>
>>>...........>>......<<<<..<<<....>>>......((((..
(..>>>>.<<<<.....>>>>.....)..))))...)))))....[[..(
((.(((.<<<<.))))))..]]...........>>>>.............
.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4d61 Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.
Resolution9.0 Å
Binding residue
(original residue number in PDB)		R116 R117 R143 R146
Binding residue
(residue number reindexed from 1)		R115 R116 R142 R145
Enzymatic activity
Enzyme Commision number 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0016829 lyase activity
GO:0140078 class I DNA-(apurinic or apyrimidinic site) endonuclease activity
Biological Process
GO:0006281 DNA repair
GO:0006412 translation
GO:0006417 regulation of translation
GO:0006915 apoptotic process
GO:0031334 positive regulation of protein-containing complex assembly
GO:0051092 positive regulation of NF-kappaB transcription factor activity
GO:0051301 cell division
GO:2001235 positive regulation of apoptotic signaling pathway
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005819 spindle
GO:0005840 ribosome
GO:0005856 cytoskeleton
GO:0015935 small ribosomal subunit
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0045202 synapse
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4d61, PDBe:4d61, PDBj:4d61
PDBsum4d61
PubMed25601755
UniProtG1TNM3|RS3_RABIT Small ribosomal subunit protein uS3 (Gene Name=RPS3)

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