Structure of PDB 4cn3 Chain D Binding Site BS02

Receptor Information

>4cn3 Chain D (length=78) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDDKDCLIDK
RQRNRCQYCRYQKCLAMGMKREAVQEER

Ligand information

>4cn3 Chain F (length=17) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

tgtgaactttgaactag

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	4cn3 Structural Basis of Natural Promoter Recognition by the Retinoid X Nuclear Receptor.
Resolution	2.35 Å
Binding residue (original residue number in PDB)	E153 G154 R161 R184 N185 Q188 R191 R209
Binding residue (residue number reindexed from 1)	E22 G23 R30 R53 N54 Q57 R60 R78
Binding affinity	PDBbind-CN: Kd=44nM

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003700	DNA-binding transcription factor activity
GO:0008270	zinc ion binding
GO:0043565	sequence-specific DNA binding

	Biological Process
GO:0006355	regulation of DNA-templated transcription

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:4cn3, PDBe:4cn3, PDBj:4cn3
PDBsum	4cn3
PubMed	25645674
UniProt	P19793\|RXRA_HUMAN Retinoic acid receptor RXR-alpha (Gene Name=RXRA)

[Back to BioLiP]