Structure of PDB 3u4f Chain D Binding Site BS02
Receptor Information
>3u4f Chain D (length=371) Species:
89187
(Roseovarius nubinhibens ISM) [
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LYFQSMKLTAIETFTNEFVGFVRVTSEDGARGWGQVSTYHSDITCEVLHR
QVAPWMLGQDCSDLDDLLDLVTEREHKFPGSYLRRAMAGVDTAIWDLRGK
QAGKPVAELLGGSAGTIRAYASSMKRDITPHDEAERMKRLRDAHGFDAFK
VRAGAEVGRGRDEWPGRTEEIVPTMRREMGDSAALLIDANSCYAPAQAIE
LGKLLQDHGFSHFEEPCPYWELEQTKEVSEALDIDVTGGEQDCDLTTWRR
MIDMRAVDVVQPDILYLGGICRTLRVARMAEAAALPVTPHCANLSLVTLF
TMHLLRAIPNAGKYLEFSIEGEDYYPWQDGLFVEDPYRIEDGHARVTEAP
GWGVEICPEWLARSAYKVSRA
Ligand information
Ligand ID
MG
InChI
InChI=1S/Mg/q+2
InChIKey
JLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341
[Mg++]
Formula
Mg
Name
MAGNESIUM ION
ChEMBL
DrugBank
DB01378
ZINC
PDB chain
3u4f Chain D Residue 374 [
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Receptor-Ligand Complex Structure
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PDB
3u4f
Crystal structure of a mandelate racemase (muconate lactonizing enzyme family protein) from Roseovarius nubinhibens
Resolution
1.9 Å
Binding residue
(original residue number in PDB)
S224 L227
Binding residue
(residue number reindexed from 1)
S229 L232
Annotation score
4
Enzymatic activity
Catalytic site (original residue number in PDB)
V31 T33 S117 K145 R147 D157 D183 N185 F208 E209 D230 G234 E235 Q256 D258 H285 A287 N288 K308 E311 I314 G316
Catalytic site (residue number reindexed from 1)
V36 T38 S122 K150 R152 D162 D188 N190 F213 E214 D235 G239 E240 Q261 D263 H290 A292 N293 K313 E316 I319 G321
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000287
magnesium ion binding
GO:0016836
hydro-lyase activity
GO:0046872
metal ion binding
Biological Process
GO:0016052
carbohydrate catabolic process
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Molecular Function
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Biological Process
External links
PDB
RCSB:3u4f
,
PDBe:3u4f
,
PDBj:3u4f
PDBsum
3u4f
PubMed
UniProt
A3SMJ4
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