Structure of PDB 3q1o Chain D Binding Site BS02

Receptor Information
>3q1o Chain D (length=299) Species: 210 (Helicobacter pylori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSPNLSFYYNECERFESFLKNHHLHLESFHPYLEKAFFEMVLNGGKRFRP
KLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAA
LRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILS
ANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVA
SGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKN
SFVNLLGLERANNYAQTLKTEVLNDLDALKPAYPLLQENLNALLNTLFK
Ligand information
Ligand IDDMA
InChIInChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)
InChIKeyCBIDRCWHNCKSTO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(=CCOP(=O)(O)OP(=O)(O)O)C
ACDLabs 10.04O=P(OP(=O)(OC/C=C(/C)C)O)(O)O
OpenEye OEToolkits 1.5.0CC(=CCO[P@@](=O)(O)OP(=O)(O)O)C
CACTVS 3.341CC(C)=CCO[P@](O)(=O)O[P](O)(O)=O
CACTVS 3.341CC(C)=CCO[P](O)(=O)O[P](O)(O)=O
FormulaC5 H12 O7 P2
NameDIMETHYLALLYL DIPHOSPHATE
ChEMBLCHEMBL343480
DrugBankDB01785
ZINCZINC000008215740
PDB chain3q1o Chain D Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3q1o Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily.
Resolution2.4 Å
Binding residue
(original residue number in PDB)		K47 R50 H85 R104 T187 F224 D228
Binding residue
(residue number reindexed from 1)		K46 R49 H84 R103 T186 F223 D227
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004659 prenyltransferase activity
GO:0016740 transferase activity
GO:0046872 metal ion binding
Biological Process
GO:0008299 isoprenoid biosynthetic process

View graph for
Molecular Function
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Biological Process
External links
PDB RCSB:3q1o, PDBe:3q1o, PDBj:3q1o
PDBsum3q1o
PubMed23493556
UniProtO25583

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