Structure of PDB 3m2m Chain D Binding Site BS02

Receptor Information
>3m2m Chain D (length=132) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLVASNLNLKPGECLKVRGELAPDAKSFVLNLGKDSNNLCLHFNPRFNAH
GDANTIVCNSKDDGTWGTEQRETAFPFQPGSITEVCITFDQADLTIKLPD
GHEFKFPNRLNMEAINYMAADGDFKIKCVAFE
Ligand information
Ligand IDGAL
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-FPRJBGLDSA-N
SMILES
SoftwareSMILES
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.7.2C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
OpenEye OEToolkits 1.7.2C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
FormulaC6 H12 O6
Namebeta-D-galactopyranose;
beta-D-galactose;
D-galactose;
galactose
ChEMBLCHEMBL300520
DrugBank
ZINCZINC000002597049
PDB chain3m2m Chain K Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3m2m Monovalent interactions of galectin-1.
Resolution2.95 Å
Binding residue
(original residue number in PDB)		H44 R48 E71
Binding residue
(residue number reindexed from 1)		H42 R46 E69
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0030246 carbohydrate binding
GO:0030395 lactose binding
GO:0042802 identical protein binding
GO:0043236 laminin binding
Biological Process
GO:0002317 plasma cell differentiation
GO:0006915 apoptotic process
GO:0009410 response to xenobiotic stimulus
GO:0010812 negative regulation of cell-substrate adhesion
GO:0010977 negative regulation of neuron projection development
GO:0031295 T cell costimulation
GO:0034120 positive regulation of erythrocyte aggregation
GO:0035900 response to isolation stress
GO:0043065 positive regulation of apoptotic process
GO:0045185 maintenance of protein location
GO:0045445 myoblast differentiation
GO:0046598 positive regulation of viral entry into host cell
GO:0048678 response to axon injury
GO:0050729 positive regulation of inflammatory response
GO:0071333 cellular response to glucose stimulus
GO:0071407 cellular response to organic cyclic compound
GO:0098609 cell-cell adhesion
GO:2001200 positive regulation of dendritic cell differentiation
Cellular Component
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0009986 cell surface
GO:1990724 galectin complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3m2m, PDBe:3m2m, PDBj:3m2m
PDBsum3m2m
PubMed20873803
UniProtP11762|LEG1_RAT Galectin-1 (Gene Name=Lgals1)

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