Structure of PDB 3lnd Chain D Binding Site BS02

Receptor Information
>3lnd Chain D (length=202) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SWMANQFFLLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFII
NENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDIN
DNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQ
GQPYFSVESETGIIKTALLNREQYQVVIQAKDMGGQMGGLSGTTTVNITL
TD
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain3lnd Chain D Residue 209 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3lnd Two-step adhesive binding by classical cadherins.
Resolution2.82 Å
Binding residue
(original residue number in PDB)		E11 E66 D98 I99 D101 D134
Binding residue
(residue number reindexed from 1)		E11 E66 D98 I99 D101 D134
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
Biological Process
GO:0007155 cell adhesion
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
GO:0098609 cell-cell adhesion
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:3lnd, PDBe:3lnd, PDBj:3lnd
PDBsum3lnd
PubMed20190754
UniProtP97326|CADH6_MOUSE Cadherin-6 (Gene Name=Cdh6)

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