Structure of PDB 3knt Chain D Binding Site BS02

Receptor Information
>3knt Chain D (length=206) Species: 2190 (Methanocaldococcus jannaschii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLIKKIEELKNSEIKDIIDKRIQEFKSFKNKSNEEWFKELCFCILTANFT
AEGGIRIQKEIGDGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKN
IKDIVESFENEKVAREFLVRNIKGIGYQEASHFLRNVGYDDVAIIDRHIL
RELYENNYIDEIPKTLSRRKYLEIENILRDIGEEVNLKLSELDLYIWYLR
TGKVLK
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3knt The C-terminal Lysine of Ogg2 DNA Glycosylases is a Major Molecular Determinant for Guanine/8-Oxoguanine Distinction.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		R84 F85 Y86 R87 K88 K165 R170
Binding residue
(residue number reindexed from 1)		R83 F84 Y85 R86 K87 K164 R169
Enzymatic activity
Enzyme Commision number 3.2.2.-
4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0016829 lyase activity
GO:0140078 class I DNA-(apurinic or apyrimidinic site) endonuclease activity
Biological Process
GO:0006281 DNA repair
GO:0006284 base-excision repair

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3knt, PDBe:3knt, PDBj:3knt
PDBsum3knt
PubMed20083120
UniProtQ58134|OGG1_METJA 8-oxoguanine DNA glycosylase/AP lyase (Gene Name=ogg)

[Back to BioLiP]