Structure of PDB 3j9x Chain D Binding Site BS02

Receptor Information
>3j9x Chain D (length=128) Species: 157899 (Sulfolobus islandicus rod-shaped virus 2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SRSYSQRYAKWQAKFNAFSNPTVASTILSNVSPVAQQNFQTNVPKFTSVN
ENVSAVLTQYGITGPNRAIYQGFGLKVARALNRIGSGPALVNMINGLKGY
YISAFNANPQVLDAVVNIITGSPTGYVS
Ligand information
>3j9x Chain 8 (length=348) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatat
Receptor-Ligand Complex Structure
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PDB3j9x A virus that infects a hyperthermophile encapsidates A-form DNA.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		S7 R8 R13 K16 K20 N44 F45 F52 L81 K82 R85 Y107 F111
Binding residue
(residue number reindexed from 1)		S1 R2 R7 K10 K14 N38 F39 F46 L75 K76 R79 Y101 F105
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0019029 helical viral capsid
GO:0044423 virion component

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Molecular Function
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Cellular Component
External links
PDB RCSB:3j9x, PDBe:3j9x, PDBj:3j9x
PDBsum3j9x
PubMed25999507
UniProtQ8V9P2|CAPSD_SIRV2 Major capsid protein

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