Structure of PDB 2yze Chain D Binding Site BS02
Receptor Information
>2yze Chain D (length=287) Species:
1665
(Arthrobacter globiformis) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
TKVVLGQNQYGKAEVRLVKVTRNTARHEIQDLNVTSQLRGDFEAAHTAGD
NAHVVATDTQKNTVYAFARDGFATTEEFLLRLGKHFTEGFDWVTGGRWAA
QQFFWDRINDHDHAFSRNKSEVRTAVLEISGSEQAIVAGIEGLTVLKSTG
SEFHGFPRDKYTTLQETTDRILATDVSARWRYNTVEVDFDAVYASVRGLL
LKAFAETHSLALQQTMYEMGRAVIETHPEIDEIKMSLPNKHHFLVDLQPF
GQDNPNEVFYAADRPYGLIEATIQREGSRADHPIWSN
Ligand information
Ligand ID
NOB
InChI
InChI=1S/B2H3O5.Li/c3-1(4)7-2(5)6;/h3-5H;/q-1;+1
InChIKey
OBDSFKZXLCSJJG-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
OpenEye OEToolkits 1.5.0
[Li]OB(O)OB(O)O
Formula
B2 H3 Li O5
Name
(dihydroxyboranyloxy-hydroxy-boranyl)oxylithium
ChEMBL
DrugBank
ZINC
PDB chain
2yze Chain D Residue 404 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
2yze
Trapping of the uric acid substrate in the crystal structure of urate oxidase from Arthrobacter globiformis
Resolution
1.99 Å
Binding residue
(original residue number in PDB)
F163 R180 L222 Q223 N249
Binding residue
(residue number reindexed from 1)
F153 R170 L212 Q213 N239
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
K22 T67 R180 Q223 H251
Catalytic site (residue number reindexed from 1)
K12 T57 R170 Q213 H241
Enzyme Commision number
1.7.3.3
: factor independent urate hydroxylase.
Gene Ontology
Molecular Function
GO:0004846
urate oxidase activity
GO:0016491
oxidoreductase activity
Biological Process
GO:0006144
purine nucleobase metabolic process
GO:0019628
urate catabolic process
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:2yze
,
PDBe:2yze
,
PDBj:2yze
PDBsum
2yze
PubMed
UniProt
D0VWQ1
|URIC_ARTGO Uricase (Gene Name=uox)
[
Back to BioLiP
]