Structure of PDB 8jiv Chain Ch Binding Site BS02

Receptor Information

>8jiv Chain Ch (length=116) Species: 4565 (Triticum aestivum)

VKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSI
ARVLTVINAKQRAQLRLFYKKYAPLDLRAKQTRAIRRRLSPDEKSRVLEK
TKKRTVHFPQRKFAIK

Ligand information

>8jiv Chain Ac (length=152)

cgacucucggcaacggauaucucggcucucgcaucgaugaagaacguagc
gaaaugcgauaccuggugugaauugcagaauccgugaaccaucgagucuu
ugaacgcaaguugcgcccgaggggccgagggcacgccugccugggcguca
cg

.........................................<<<<<<.((
.....>>>....<<<<<<......)).............>>>>.>>..>>
>....<<.....>><<<<..<<..>>..>>>>..................
..

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8jiv Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes.
• Resolution: 2.84 Å
• Binding residue (original residue number in PDB): K7 W12 K37 N46 R52 A56 R57 L59 T60 N63 R67 R71 K87 T89 R90 R93
• Binding residue (residue number reindexed from 1): K2 W7 K32 N41 R47 A51 R52 L54 T55 N58 R62 R66 K80 T82 R83 R86

Gene Ontology

Molecular Function

• GO:0003729 mRNA binding
• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:8jiv, PDBe:8jiv, PDBj:8jiv
• PDBsum: 8jiv
• PubMed: 38458197
• UniProt: Q8L805|RL35_WHEAT Large ribosomal subunit protein uL29 (Gene Name=RPL35)