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Structure of PDB 8pvk Chain Cd Binding Site BS02

Receptor Information

>8pvk Chain Cd (length=462) Species: 759272 (Thermochaetoides thermophila DSM 1495)

GTGKKEKNRLLREGRTPGDPHVKGENFYRSAKKIKTLNILKEGKPIRDSK
GKIVKAASFQSKEVPKAVIEPNRKWFTNTRVISQDTLQSFREAMAEKQKD
PYTVLLKSNKLPMSLIRDGPKLEDGLKKHQAKMTIEREPFSETFGPKAQR
KRPKLSFNTVDELAGYSEQSLDSYHARLEEKKLLSVATAKEAIFNKGTSK
RIWNELYKVIDSSDVILHVLDARDPLGTRCRHVEKYLAAEAPHKHLVFVL
NKIDLVPSSQAAAWIRILQKDHPTCAMRASITNPFGRGSLIDLLRQFSVL
HKDRKQISVGLIGYPNVGKSSIINALRGKAVAKVAPIPGETKVWQYVTLM
KRIYLIDCPGIVPPNQHDTPEDLLLRGVVRVENVEHPEQYIPAVLRKVKQ
HHMERTYELRGWKDHIEFLEMLARKSGRLLKGGEPDVDGVAKQVLNDFMR
GKIPWFTPAPEP

IndexError

Python 3.6.8: /usr/bin/python3 Thu Nov 28 23:44:28 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8pvk', asym_id = 'Cd', bs = 'BS02', title = 'Structural insights into coordinating 5S RNP rot...TS2 pre-RNA processing during ribosome formation.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8pvk', asym_id='Cd', bs='BS02', title='Structural insights into coordinating 5S RNP rot...TS2 pre-RNA processing during ribosome formation.')

    925                 p=subprocess.Popen(cmd,shell=True,stdout=subprocess.PIPE)

    926                 stdout,stderr=p.communicate()

=>  927                 line     =stdout.decode().splitlines()[0]

    928                 items    =line.split('\t')

    929                 rhea     ='\n'.join(["RHEA:"+r for r in items[2].split(',')])

line = '8pvk\tCd\tGTP\t4', stdout = b'', stdout.decode = <built-in method decode of bytes object>, ).splitlines undefined

IndexError: list index out of range
      args = ('list index out of range',)
      with_traceback = <built-in method with_traceback of IndexError object>