Structure of PDB 6xu8 Chain CS Binding Site BS02 |
|
>6xu8 Chain A5 (length=3703)
[Search RNA sequence]
[Download ligand structure]
[Download structure with residue number starting from 1]
[View ligand structure]
|
uuauauacaaccucaacucauaugggacuacccccugaauuuaagcauau uaauuaggggaggaaaagaaacuaacaaggauuuucuuaguagcggcgag cgaaaagaaaacaguucagcacuaagucacuuugucuauauggcaaaugu gagaugcaguguauggagcgucaauauucuaguaugagaaauuaacgauu uaaguccuucuuaaaugaggccauuuacccauagagggugccaggcccgu auaacguuaaugauuacuagaugauguuuccaaagagucguguugcuuga uagugcagcacuaagugggugguaaacuccaucuaaaacuaaauauaacc augagaccgauaguaaacaaguaccgugagggaaaguugaaaagaacucu gaauagagaguuaaacaguacgugaaacugcuuagagguuaagcccgaug aaccugaauauccguuauggaaaauucaucauuaaaauuguaauauuuaa auaauauuaugagaauagugugcauuuuuuccauauaaggacauuguaau cuauuagcauauaccaaauuuaucauaaaauauaacuuauaguuuauucc aauuaaauugcuugcauuuuaacacagaauaaauguuauuaauuugauaa agugcugauagauuuauaugauuacagugcguuaauuuuucggaauuaua uaauggcauaauuaucauugauuuuuguguuuauuauaugcacuuguaug auuaacaaugcgaaagauucaggauaccuucgggacccgucuugaaacac ggaccaaggagucuaacauaugugcaaguuauugggauauaaaccuaaua gcguaauuaacuugacuaauaaugggauuaguuuuuuagcuauuuauagc uaauuaacacaaucccggggcguucuauauaguuauguauaauguauauu uauauuauuuaugccucuaacuggaacguaccuugagcauauaugcugug acccgaaagauggugaacuauacuugaucagguugaagucaggggaaacc cugauggaagaccgaaacaguucugacgugcaaaucgauugucagaauug aguauaggggcgaaagaccaaucgaaccaucuaguagcugguuccuuccg aaguuucccucaggauagcuggugcauauauuauauaaaauaaucuuauc ugguaaagcgaaugauuagaggccuuagggucgaaacgaucuuaaccuau ucucaaacuuuaaauggguaagaaccuuaacuuucuugauaugaagauca agguuaugauauaaaugucccagugggccacuuuugguaagcagaacugg cgcugugggaugaaccaaacguaauguuacgugcccaaauuaacaacuca ugcagauaccaugaaaggcguugguugcuuaaaacagcaggacggugauc auggaagucgaaauccgcuaaggaguguguaacaacucaccugccgaagc aacuagcccuuaaaauggauggcgcuuaaguuguauaccuauacauuacc gcuaaaguagaugauuuauauuacuugugauauaaauuuugaaacuuuag ugaguaggaagguacaaugguaugcguagaaguguuuggcguaagccugc auggagcugccauugguacagaucuugguggauaguagcaaauaaucgaa ugagagccuuggaggacugaaguggagaaggguuucgugugaacaguggu ugaucacgaguuagucgguccuaaguucaaggcgaaagcgaaaauuuuca aguaaaacauaauuuugaacgaaagggaauacgguuccaauuccguaacc uguugaguauccguuuguuauuaaauaugggccucgugcucauccuggca acaggaacgaccauaaagaagccgucgagagauaucggaagaguuuucuu uucuguuuuauagccguacuaccauggaagucuuucgcagagagauaugg uagaugggcuagaagagcaugacauauacuguugugucgauauuuucucc ucggaccuugaaaauuuaugguggggacacgcaaacuucucaacaggccg uaccaauauccgcagcuggucuccaaggugaagagucucuagucgauaga auaauguagguaagggaagucggcaaauuagauccguaacuucgggauaa ggauuggcucugaagauugagauagucggccuugauugggaaacuggaac uuucuugcuaaauuauaacgauuaucaauuaacaaucaauucagaacugg cacggacuuggggaauccgacugucuaauuaaaacaaagcauugugaugg cccuagcggguguugacacaaugugauuucugcccagugcucugaauguc aaagugaagaaauucaaguaagcgcgggucaacggcgggaguaacuauga cucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcauga auggauuaacgagauuccuacugucccuaucuacuaucuagcgaaaccac agccaagggaacgggcuuggaauaauuagcggggaaagaagacccuuuug agcuugacucuaaucuggcaguguaaggagacauaagagguguagaauaa gugggagauauuagaccucgguuugguaucgucaaugaaauaccacuacu cuuauuguuuccuuacuuacuugauuaaauggaacguguaucauuuccua gauuggguuuugaugcaagcuucuugaucaaaguaucacgaguuuguuau auaaucgcaaacaaauuugguauaacuccaauuacucagguaugauccaa uucaaggacauugccagguagggaguuugacuggggcgguacaucucuca aauaauaacggaggugucccaaggccagcucagugcggacagaaaccaca cauagagcaaaagggcaaaugcugacuugaucucgguguucaguacacac agggacagcaaaagcucggccuaucgauccuuuugguuuaaagaguuuuu aacaagaggugucagaaaaguuaccauagggauaacuggcuuguggcggc caagcguucauagcgacgucgcuuuuugauccuucgaugucggcucuucc uaucauugugaagcaaaauucaccaagcguuggauuguucacccaugcaa gggaacgugagcuggguuuagaccgucgugagacagguuaguuuuacccu acuaaugacaaaacguuguugcgacagcauuccugcguaguacgagagga acccgcagguacggaccaauggcacaauacuuguucgagcgaacaguggu augacgcuacguccguuggauuaugccugaacgccucuaaggucguaucc gugcuggacugcaaugauaaauaaggggcaauuugcauuguauggcuucu aaaccauuuaaaguuuauaauuuacuuuauaaacgacaauggaugugaug ccaauguaauuuguaacauaguaaauugggaggaucuucgaucaccugau gccgcgcuaguuacauauaaaagcauuauuuaauacaaugacaaagccua gaaucaauuguaaacgacuuuuguaacaggcaagguguuguaagugguug agcagcugccauacugcgauccacugaagcuuauccuuugcuugaugauu cga |
..............................<<<<<<<....<<....>>. ....>>>>>>.>.........<<....>>..<<<<<<.....<<.....> >....>>>>>>..[[[..........<<<<<<<<<<.....>>>>>>.>> >>.............<.<.........<<<<<<<......<<<<<<<.<< .<...<<<<.......>>>>.......((......<<<.....))>>>.> ..>>>>>>>>>...>>>>>>>.......>.>........<<<<<<<.... ....>>>>>>>.....(((((..<<<<<<)))))..]]]........... .......................<<....>>...............<<<< ....>>>>...................................<<<<<.< ..<<<<<.........<<<<<<<......<<<<<...<<<<<<<<<<... ..>>>>>>>>.>>..>>>>>.......>>>>>>>.......<<<<<<..< <<<<<<<<<<.<<.<.....<<........<<<.....<.....<..... .............>....>.........>>>.......>.>....>.>>. >.>>>>>>>>>>..........<<<.<.....<<<<<<....>>>>>><< <<<<<..<<<<..<<<...>>>..>>>>...>>>>>>>.....>.>>>.. ....>>>>>>........>>>>>....>.>>>>>..<<<<........>> >><<<<<<.....<<.<<<<<<<<<..<<<...<<<.......>>>...> >>...<......>..........<<<<<<..<....<<<<<......>>> >>...>....>>>>>><<<<<<<<<<....<<<<<.<..<.......... ..........>...>..>>>>>>>>>>>>.>>>...>>>>>>>>>.>>.. .<<.<...<<<<<<.....<<<<<<<<<..<<<....<<<<<<<....>> >>>>>.....>>>...<<<..<<.<<........>>>>.>>>....>>>> >>>>>...<<.......>>......>>>>>>......>.>>..<<<<<<. ...<.<<<....>>>.><<.<<<<................<<.<.<<<<< <....<<<....<<<....<<<...<.<.<<.......>>.>.>.>>>.. ..>>>..>>.>....>>>>>>...<.<.<.<<<..........>>>.>.> .>.....>.>>....>>>>...>>..<<<<.<<<<<.....>>>>>.>>> >....<<<......>>>...<<<<<<<...<<(((........<<<<... ...<<..........<<<.<<<<<<<<<<.......<<<<<.<<...... ...............>>......................>>>>>...>>> >>>>>>>>>>..........))).>>...>>>>...>>....>>>>>>>< <<<<<<<<.....<.<<..<<<<....>>>>...>>.>.....>>>>>>> >>....>>>>>>..<<<<<<<<.<<......<<<<..<<<....>>>.>> >>...>>>>>>>>>>........>>>>>><<......<<......<<.<< ........>>.>>.<<<<<....<<<<<.<<...<<<<<....<<..... >>..>>>>>....((<<<<<<...<<<<...<<....>>..........< ............>...>>>>....>>>..<<<<<........>>>>>))< <<<<<<<.....................<<........>>....<<<... .>>>......<<<<<<<....<<<..<<<<<...<.<<.<<<<..{{{.. >>>>.><...<<<<<...<<<<<<<<....<<<.....>>>....>>>>> >>>...>>>>>.....><<<<<<.......>>>>>>>.>...>..>>>>. .>>>..........>>>>>>>.................>>>>>>>>.>>> ..>>.....<<......>>>>>>>.<<<<.....>>>>.>>>>>..<<<< .....<<<<<<<.<<...............<<<<<............... >>>>><<.<<<<<<<<<.........<<...................... ..................>>..............>>>..>>>>>>.>>.. ..........<<<<<<<<<..<<<.........>>>..<<<<<<<....< <<<....>>>>......>>>>>>>...<<..<<<..<<<<<<....<<<. ..<.<<<<....>>>>..>..>>>.>>>>..>>>>><<<<<<.......> >>>>>........<...........<<<<<.......>>>>>.....>.. ...>>....>>.>>>>>>>.....>>.>>>>>>>..>>>>>>....>>.. ..<<<<<........>>>>>....[[[[[..{{{.........{{{..{{ [[[[..<<<<<.<<<<<<<<..<<<<<<....<..<<<............ .<<<....<<<<<<<<....>>>>>>>>..............>>>....> >>..>.....>>>>>>...<<<<<.....<<<<...<<<<.....<.... .....>.......>>>>...............<<<<<............. ......................................>>>>>..>>>>. .>>>>>.....>>>>>>>>..>>>>>...<<<.....>>>..<<<<<<.. .........>>>>>>..<<...<<.<<<<...<<<.<<.......>>.>> >.....<<...(((>>....>>>>.>>...<<<<.<<<<.......>>>> .>>>>.<.<....>.>.>>))).......((((((..((((.>>>>>>)) ))))))))..........]]]]..}}.}}}.......<<.<...<<<<<< ...<<.......>>...>>>>>>....>.>.>.......<<<<<.<<<<< <..<.<.<<<<<......>>>>>...>.>.<<<.........>>>..... >>>>>.>...>>>.>>....<<<<<<<....>>>.>>>>........}}} .]]]]]........<<<<<<<<..<<<<.<.<<<<<<............. ...>>>>>>.><<<<<....<<<...<<<<<<<<<.}}}..>>>>..>>> >>...>>>..>>>>>.<<<<....<<<<...........>>>>....>>> >.>>>>....>>>>>>>>.......<<<<....<<<<<<<<......... .............<<<<<<<......>>>>>>>................. ............<<<<<....<............................ .....>...>>>>>....................>>>>>>.>>..>>>>. <<<<<<<.............>>....<<<<<<<<<.<<<....<<<<... .<..............>...>>>>...>>>....>>>>.>>>>>..>>>> >.. |
|
Global view | Local view | Structure summary |
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
[Spin on]
[Spin off]
[Reset]
[High quality]
[Low quality]
[White background]
[Black background]
|
PDB | 6xu8 Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching. |
Resolution | 3.0 Å |
Binding residue (original residue number in PDB) | T70 P72 K74 S86 R87 S88 H91 N92 M93 Y94 R95 R111 G114 A115 R116 H117 R118 R120 R139 S148 K151 V155 Q156 R157 K161 N163 R164 K165 F169 R170 P172 R173 T174 Y175 F176 Q177 |
Binding residue (residue number reindexed from 1) | T66 P68 K70 S82 R83 S84 H87 N88 M89 Y90 R91 R107 G110 A111 R112 H113 R114 R116 R135 S144 K147 V151 Q152 R153 K157 N159 R160 K161 F165 R166 P168 R169 T170 Y171 F172 Q173 |
|
|
Enzyme Commision number |
? |
|
|
|