Structure of PDB 8i9y Chain CR Binding Site BS02

Receptor Information

>8i9y Chain CR (length=167) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

RELQKRKRRSSRPTIRMPNRRKKALNPAGNNIIAKSWNKKETLSQNYTRF
GLVAKLGKATGGTAPGNKALLSESDAVPQQQQQENHIRQHDLELESKPEV
LRALEREATRPVEKTVRHQSEREREWLQRLVDKHGDDVAAMARDRKLNPY
QQTASDIKRRLKKAGLL

Ligand information

>8i9y Chain C2 (length=256) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

aaacuuucaacaacggaucucuugguucuggcaucgaugaagaacgcagc
gaaaugcgauaaguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgcccgccgguauuccggcgggcaugccuguucgag
cgucauuucaaccaucaagcccugggcuuguguuggggacccgcggcugc
ucgcgggcccugaaaagcaguggcgggcucgcuggcgggugccagccgua
aaaccc

.........................................<<<<<<<((
....>>>>.....<.<<<<.....))............>.>>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
...............<<<<<<...>>>>>>....<<<<.<<<<<<<....
>>>>>>>>>>>.........<<<<<<<<<<<<..>>>>>>.>>.>>>>..
......

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8i9y Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis.
Resolution	3.1 Å
Binding residue (original residue number in PDB)	R3 R8 R11 S12 S13 R14 P15 M19 R22 K24
Binding residue (residue number reindexed from 1)	R1 R6 R9 S10 S11 R12 P13 M17 R20 K22

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Biological Process
GO:0042273	ribosomal large subunit biogenesis

	Cellular Component
GO:0005730	nucleolus

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Biological Process

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Cellular Component

External links

PDB	RCSB:8i9y, PDBe:8i9y, PDBj:8i9y
PDBsum	8i9y
PubMed	37129998
UniProt	G0S832

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