Structure of PDB 6sgb Chain CQ Binding Site BS02

Receptor Information

>6sgb Chain CQ (length=219) Species: 5702 (Trypanosoma brucei brucei)

PWWNFQTEHRQRCVLMYGGARTKNTHNANHRVFIKKYKRNAFPNRTRHHW
AVSMTGVLSQRPRRMPWPYDLTSLIFNQPRQGSDKIGYVVGTSMLKTAVV
ATNHMVYYPKFNQRVSRTKRFFAHDEDLACVEGDLVHIKQCRKISKYKHY
YVFSILEPNVEGRERLKLGLKAVPPPLFGYPVSRRIVKLNLTSTEGTQEK
LAAAIQEHVQDAYRFSGPT

Ligand information

>6sgb Chain CA (length=609)

uaaauuauggucaauuguuaguauucauauuaauuuuuuuaaauguuuua
ucauuuuauaaagguuuauuuuugaaagauuuuuuguauaaaauuuuagg
aauaguuaauaauaauuuauaauuuugauuagauuguuuuguuaaugcua
uuagauggguguggaaaaauaaaaaaaauaauuaauauauaucaauaaua
aauuaaauuaaucuauuagucagaaauggaugccagccguugcgguaauu
ucuaugcuuuuaaauauuauacaauuaucauauuaaauuguuaagugcug
auuuaaccaauaaaaauauaaauaauuuuuauuuguuuuuaaacaccauu
agguauaugcaaauauaaaauuauaguaauuauaaauuauauuauauuau
auuuauucauauaauuaauaggauaauauuuguaguuuuugauaccauga
uaaggauuauaaauugaaaguguuaauaucauaaucaaaauuuauuauuu
auauuaaauauguauguguagauaaaauaagaaauuaaaaagcaccaauu
uuuauaauaaaaauaacgugcaguaauuaauauauuuauaaaaauauauu
uuuuuuuuu

...........................<<<<......<<<........<.
..>..........<<<.............................<....
.<<...<<<.......>>>..>>........>........<<....>>..
...>>>...........................................>
>>.........................<<<..<<.........>>....>
>>..........>>>>.......<<.<<........<<<<..........
.......>>>>..................<<<<<<<........<<<...
.>>>....>>>>>>>....>>.>>....<<...........<<<<.....
<<.<<...<<<.....................................<.
<<<.<.<...........>.>.>>>.>...............>>>....>
>.>>.............>>>>............>>.......<<<....<
<<<......>>>>....>>>........<<<<<<<<<....>>>>>>>>>
.........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6sgb Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.
• Resolution: 3.3 Å
• Binding residue (original residue number in PDB): F14 C22 R30 T34 H35 R40 K47 R48 N49 F51 P52 N53 T55 R56 H57 H58 W59 A60 S62 T64 G65 V66 L67 S68 Q69 R70 R72 R73 R89 M103 L104 K105 T106 H113 P118 K119 Q122 R123 R126 K128 R129 F130 F131 Q149 S154 K155 Y156 K157 H158 Y189 P190 V191 S192 R193
• Binding residue (residue number reindexed from 1): F5 C13 R21 T25 H26 R31 K38 R39 N40 F42 P43 N44 T46 R47 H48 H49 W50 A51 S53 T55 G56 V57 L58 S59 Q60 R61 R63 R64 R80 M94 L95 K96 T97 H104 P109 K110 Q113 R114 R117 K119 R120 F121 F122 Q140 S145 K146 Y147 K148 H149 Y180 P181 V182 S183 R184

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Tue Dec 3 05:01:12 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6sgb', asym_id = 'CQ', bs = 'BS02', title = 'Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6sgb', asym_id='CQ', bs='BS02', title='Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6sgb', asym_id = 'CQ'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6sgb', asym_id='CQ')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>