Structure of PDB 6sga Chain CE Binding Site BS02

Receptor Information

>6sga Chain CE (length=392) Species: 5702 (Trypanosoma brucei brucei)

GGVPRIYYAWMRPGSFTRRRFEKMRNPFVDLETGTSLYFRDTRDSAEAIA
HAADSKGIKGMDNAIDLYNEYRIVPDLYPEGFQWKHKLNTEYNQWRSNTW
LTPDLIPKEHRGRFLCNFQLNIVAYDMRVVKFSPKDHRQWIYCVLYVGSG
KGIAGWGRAVAPSTQEAKKEAIREAFSNIIAVDLEQEGPMYPVRVNADGV
RVLLYPARRIVANFRVADILCAFGFQHAGCRINLKATNNPKSPTHTVEGV
FEAVKALRSVSEIAASRGKVPHSLIYNIYPYLEEIRRRKGMMAMHPPGKD
GLLMPDRVVDNRLPDHLKRGYYDDVYWKDFFAGSDEHLNEPRMGLRGDEM
RRRLEEAQTSPAPTTAKDTRRRTLEDVLKRLGKTTRDLGSIP

Ligand information

>6sga Chain CA (length=463)

uaaauuauggucaauuguuaguauucauauuaauuuuuuuaaauguuuua
ucauuuuauaaagguuuauuuuugaaagauuuuuuguauaaaauuuuagg
aauaguuaauaauaauuuauaauuuugauuagauuguuuuguuaaugcua
uuagauggguguggaaaaauaaaaaaaauaauuaauauauaucaauaaua
aauuaaauuaaucuauuagucagaaauggaugccagccguugcgguaauu
ucuaugcuuuuaaauauuauacaauuaucauauuaaauuguuaagugcug
auuuaaccaauaaaaauauaaauaauuuuuauuuguuuuuaaacaccauu
agguauaugcaaauauaaaauuauaguaauuauagaaauuaaaaagcacc
aauuuuuauaauaaaaauaacgugcaguaauuaauauauuuauaaaaaua
uauuuuuuuuuuu

...........................<<<<......<<<........<.
..>..........<<<.............................<....
.<<...<<<.......>>>..>>........>........<<....>>..
...>>>...........................................>
>>.........................<<<..<<.........>>....>
>>..........>>>>.......<<.<<........<<<<..........
.......>>>>..................<<<<<<<........<<<...
.>>>....>>>>>>>....>>.>>....<<.......>>.......<<<.
...<<<<......>>>>....>>>........<<<<<<<<<....>>>>>
>>>>.........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6sga Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.
• Resolution: 3.1 Å
• Binding residue (original residue number in PDB): G23 G24 Y30 R223 L225 Y227 A234 N235 R253 K257 A258 N299
• Binding residue (residue number reindexed from 1): G1 G2 Y8 R201 L203 Y205 A212 N213 R231 K235 A236 N277

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Dec 1 01:34:09 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6sga', asym_id = 'CE', bs = 'BS02', title = 'Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6sga', asym_id='CE', bs='BS02', title='Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6sga', asym_id = 'CE'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6sga', asym_id='CE')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>